Co-expression analysis

Gene ID	Ta.15682.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g09032: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.01
%ile	3.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.68	Ta.15682.1.S1_at	CA486291	-	-	3e+0	At3g09032	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	0.92	Ta.1679.3.S1_at	CA610132	-	-	3e-1	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.93	TaAffx.128418.127.A1_x_at	CA730835	-	-	1e+0	At2g15830	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.92	Ta.544.1.S1_at	BE606312	-	-	1e+0	At4g37090	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.12023.1.A1_at	BQ171287	-	-	2e+0	At3g04800	ATTIM23-3	O.I.	H.G.	S.X.	Please select
-	0.7	0.91	Ta.18421.1.S1_at	CA636274	-	-	3e-6	At2g37250	ADK (ADENOSINE KINASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7	97.1	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.3	96.7	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.9	96.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, EBro08_SQ005_I06_at, orthologous to the query gene, Ta.15682.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.8	EBro08_SQ005_I06_at	At3g09032	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	O.I.	H.G.	S.X.	Please select
0.79	91.4	HVSMEi0006J10r2_at	At3g09032	-	-	3e+0	At4g22710	CYP706A2	O.I.	H.G.	S.X.	Please select
0.75	89.5	Contig17985_at	At3g09032	-	-	5e+0	At4g35987	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig599_at	At3g09032	-	-	1e-6	At5g60390	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.72	87.4	HVSMEb0004J06r2_at	At3g09032	-	-	3e+0	At3g23165	LCR42 (Low-molecular-weight cysteine-rich 42)	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig25867_at	At3g09032	-	-	5e-2	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.72	87.4	Contig17984_at	At3g09032	-	-	2e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	O.I.	H.G.	S.X.	Please select
0.71	87.1	HR01B05u_at	At3g09032	-	-	5e+0	At4g33355	lipid binding	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig17982_x_at	At3g09032	-	-	2e+1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig11422_s_at	At3g09032	-	-	1e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig10263_at	At3g09032	-	-	6e+0	Atmg00285	-	O.I.	H.G.	S.X.	Please select
0.70	86.0	HW03J01T_at	At3g09032	-	-	3e-1	At1g78130	UNE2 (unfertilized embryo sac 2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig23763_at	At3g09032	-	-	1e+0	At2g38130	ATMAK3	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig7209_at	At3g09032	-	-	1e+0	At5g19190	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig8958_at	At3g09032	-	-	2e+0	At1g17190	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig9567_at	At3g09032	-	-	9e-47	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig2022_at	At3g09032	-	-	1e-7	At1g30380	PSAK (photosystem I subunit K)	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig5314_s_at	At3g09032	-	-	3e-1	At1g53935	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig12638_at	At3g09032	-	-	3e+0	At5g19790	RAP2.11 (related to AP2 11)	O.I.	H.G.	S.X.	Please select
0.64	80.9	HVSMEh0087C02r2_s_at	At3g09032	-	-	4e+0	At1g32585	VQ motif-containing protein-related	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig2958_at	At3g09032	-	-	3e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig18897_at	At3g09032	-	-	1e-8	At5g46390	peptidase S41 family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig13578_at	At3g09032	-	-	2e-1	At5g58003	CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.62	79.1	HVSMEh0095L04f_s_at	At3g09032	-	-	7e+0	At5g51900	cytochrome P450 family	O.I.	H.G.	S.X.	Please select
0.62	79.1	Contig592_at	At3g09032	-	-	2e-4	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig41_x_at	At3g09032	-	-	5e-28	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig25707_at	At3g09032	-	-	1e-2	At4g21340	B70	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig19848_at	At3g09032	-	-	5e+0	At5g20165	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	HW02O23u_s_at	At3g09032	-	-	1e+1	Atcg01080	-	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig6240_at	At3g09032	-	-	2e-14	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig15870_at	At3g09032	-	-	3e+0	At2g30760	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig18950_at	At3g09032	-	-	1e+0	At3g27520	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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