Co-expression analysis

Gene ID	Ta.15268.1.S1_x_at
Gene name	alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)
Homology with Arabidopsis	Similar to At5g53590: auxin-responsive family protein (HF=3e+0)
Module size	9 genes
NF	0.46
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	1.00	Ta.15268.1.S1_x_at	M11075.1	alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)	-	3e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	1.00	Ta.27777.1.S2_s_at	BJ239761	avenin-like b precursor-like	-	8e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.47	67.9	1.00	Ta.2446.2.S1_at	CD898174	precursor protein (AA -25 to 120)	-	6e+0	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	1.00	Ta.2446.1.S1_x_at	CD900024	-	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.44	64.5	1.00	Ta.1315.1.S1_at	AJ223492.1	monomeric alpha-amylase inhibitor	-	7e+0	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	1.00	Ta.23142.4.S1_s_at	BJ241805	-	-	6e-1	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select
0.33	46.9	1.00	Ta.24114.8.S1_at	BJ238810	-	-	7e-1	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	O.I.	H.G.	S.X.	Please select
0.29	39.2	1.00	Ta.23142.5.S1_x_at	CD868513	low molecular weight glutenin	-	4e-2	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please select
0.25	32.1	1.00	Ta.24114.8.S1_x_at	BJ238810	Gamma-gliadin	-	7e-1	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
91.9	100.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
80.6	100.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
76.5	100.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
1.7	87.1	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
1.7	87.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
1.7	87.1	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
1.6	86.1	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
1.6	86.1	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
1.5	84.9	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage