CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.147.1.S1_at

Gene name agglutinin isolectin D precursor
Homology with Arabidopsis Similar to At5g66040: STR16 (SULFURTRANSFERASE PROTEIN 16) (HF=2e+0)

Module size 6 genes

NF 0.45

%ile 70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 0.93 Ta.147.1.S1_at M25537.1 agglutinin isolectin D precursor - 2e+0 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) O.I. H.G. S.X.
0.77 90.8 0.89 TaAffx.69777.1.S1_at J02961.1 - - 1e-4 At2g43570 chitinase, putative O.I. H.G. S.X.
0.61 82.0 0.88 Ta.28378.2.S1_at BE515510 - - 1e+0 At2g02100 LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69) O.I. H.G. S.X.
0.38 54.7 0.92 Ta.5396.2.S1_a_at BJ287380 - - 5e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) O.I. H.G. S.X.
0.23 29.0 0.92 Ta.27658.1.S1_at BT009528.1 - - 8e-29 At2g19450 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1) O.I. H.G. S.X.
0.17 19.8 0.92 Ta.10760.1.S1_at BQ806324 - - 5e-1 At1g70310 SPDS2 (spermidine synthase 2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.6 99.8 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
16.8 99.6 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
16.0 99.6 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
15.6 99.6 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
10.1 99.2 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
9.0 99.0 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
8.4 98.9 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
4.5 96.9 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os04g0173800, orthologous to the query gene, Ta.147.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os04g0173800 At5g66040 - Lectin precursor (Agglutinin) 1e-1 At2g43610 glycoside hydrolase family 19 protein O.I. H.G. S.X.
0.91 98.9 Os04g0618400 At5g66040 - Hypothetical protein 4e+0 At5g43480 unknown protein O.I. H.G. S.X.
0.80 94.6 Os08g0473600 At5g66040 - Alpha-amylase isozyme 3E precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) 9e-1 Atmg00050 - O.I. H.G. S.X.
0.77 93.1 Os12g0640000 At5g66040 - Hypothetical protein 3e+0 At5g36910 THI2.2 (THIONIN 2.2) O.I. H.G. S.X.
0.73 91.1 Os01g0111600 At5g66040 - Phosphatidylethanolamine-binding protein familyprotein 1e-4 At1g18100 E12A11 O.I. H.G. S.X.
0.67 87.2 Os07g0259100 At5g66040 - Ethylene receptor 9e-2 At1g77200 AP2 domain-containing transcription factor TINY, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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