Co-expression analysis

Gene ID	Ta.147.1.S1_at
Gene name	agglutinin isolectin D precursor
Homology with Arabidopsis	Similar to At5g66040: STR16 (SULFURTRANSFERASE PROTEIN 16) (HF=2e+0)
Module size	6 genes
NF	0.45
%ile	70.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.93	Ta.147.1.S1_at	M25537.1	agglutinin isolectin D precursor	-	2e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.89	TaAffx.69777.1.S1_at	J02961.1	-	-	1e-4	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.88	Ta.28378.2.S1_at	BE515510	-	-	1e+0	At2g02100	LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.92	Ta.5396.2.S1_a_at	BJ287380	-	-	5e+0	At5g48820	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.92	Ta.27658.1.S1_at	BT009528.1	-	-	8e-29	At2g19450	TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.92	Ta.10760.1.S1_at	BQ806324	-	-	5e-1	At1g70310	SPDS2 (spermidine synthase 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.6	99.8	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
16.8	99.6	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
16.0	99.6	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
15.6	99.6	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
10.1	99.2	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the barley gene, Contig11534_at, orthologous to the query gene, Ta.147.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	Contig11534_at	At5g66040	-	-	1e-1	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	94.8	Contig12748_at	At5g66040	-	-	6e-2	At1g80130	binding	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig18940_at	At5g66040	-	-	6e-13	At5g09350	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2)	O.I.	H.G.	S.X.	Please select
0.82	93.1	Contig17080_at	At5g66040	-	-	9e+0	At5g64816	unknown protein	O.I.	H.G.	S.X.	Please select
0.82	93.1	EBem10_SQ001_P13_s_at	At5g66040	-	-	8e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	HS04L14u_at	At5g66040	-	-	2e+0	At2g21237	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig8058_at	At5g66040	-	-	5e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.79	91.4	Contig5270_x_at	At5g66040	-	-	2e+0	At4g14430	IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig7164_at	At5g66040	-	-	2e+0	At2g40435	-	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig14437_at	At5g66040	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig13441_at	At5g66040	-	-	2e-1	At2g36470	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig18343_at	At5g66040	-	-	2e+0	At2g05070	LHCB2.2	O.I.	H.G.	S.X.	Please select
0.70	86.0	EBem10_SQ001_I24_s_at	At5g66040	-	-	2e+1	At4g05494	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig13091_s_at	At5g66040	-	-	4e+0	At1g79170	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	Contig12234_at	At5g66040	-	-	1e-16	At4g24550	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig6089_at	At5g66040	-	-	2e-23	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig785_x_at	At5g66040	-	-	2e+0	At4g33450	MYB69 (MYB DOMAIN PROTEIN 69)	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig8085_at	At5g66040	-	-	2e-1	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.68	85.1	Contig545_s_at	At5g66040	-	-	8e-77	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig19116_at	At5g66040	-	-	3e+0	At2g05915	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	Contig10268_at	At5g66040	-	-	3e-16	At3g53130	LUT1 (LUTEIN DEFICIENT 1)	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig25993_at	At5g66040	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig21381_at	At5g66040	-	-	2e-1	At1g70000	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig10433_at	At5g66040	-	-	3e+0	At3g45443	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	81.4	Contig8825_at	At5g66040	-	-	2e+0	Atmg00920	-	O.I.	H.G.	S.X.	Please select
0.64	80.9	HVSMEl0010B18r2_at	At5g66040	-	-	1e+0	At1g49130	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.62	79.1	Contig17687_at	At5g66040	-	-	5e-4	At1g43620	UDP-glucose:sterol glucosyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig2119_at	At5g66040	-	-	9e-9	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig6087_s_at	At5g66040	-	-	7e+0	At5g46900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.58	74.9	Contig2562_at	At5g66040	-	-	2e-29	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig1507_at	At5g66040	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig18391_at	At5g66040	-	-	1e+1	Atmg01410	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig24055_at	At5g66040	-	-	5e+0	At5g40451	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig15773_at	At5g66040	-	-	4e+0	At4g05240	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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