Co-expression analysis

Gene ID	Ta.14547.3.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g41910: RNA polymerase II mediator complex protein-related (HF=2e-5)
Module size	10 genes
NF	0.49
%ile	75.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	67.9	0.96	Ta.14547.3.A1_x_at	BJ273621	-	-	2e-5	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.98	Ta.829.1.S1_at	BJ283440	-	-	2e-47	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.97	Ta.9887.2.S1_a_at	CK212824	-	-	8e-2	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.59	79.8	0.98	Ta.27777.1.S1_at	BJ321823	-	-	8e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.8971.1.S1_at	CA727887	-	-	2e-10	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.9903.1.S1_at	CK154650	-	-	8e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.98	Ta.14547.1.S1_at	BJ317926	-	-	6e-4	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.97	Ta.7176.1.S1_at	CD490871	-	-	2e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.22913.1.S1_at	CA715053	-	-	1e+1	At5g61200	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.97	Ta.3308.1.S1_at	BJ262335	-	-	8e-31	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.2	99.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.8	96.0	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
2.9	94.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.2	91.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.2	91.0	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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