Co-expression analysis

Gene ID	Ta.14479.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g05830: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (HF=7e-18)
Module size	6 genes
NF	0.49
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.2593.3.S1_x_at	CA665053	-	-	4e-1	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.6	98.7	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.7	93.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.9981.1.S1_at, orthologous to the query gene, Ta.14479.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	Zm.9981.1.S1_at	At2g05830	isopentenyl-diphosphate delta isomerase 2	-	7e-14	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.1022.1.A1_at	At2g05830	hypothetical protein LOC100279805	-	2e-7	At3g27820	MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)	O.I.	H.G.	S.X.	Please select
0.04	1.5	Zm.13848.1.S1_at	At2g05830	-	-	2e-10	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.17948.1.A1_s_at	At2g05830	DNA binding protein	-	2e-2	At3g24570	peroxisomal membrane 22 kDa family protein	O.I.	H.G.	S.X.	Please select
0.01	0.3	Zm.12638.1.S1_at	At2g05830	hypothetical protein LOC100216922	-	8e-7	At2g34060	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.01	0.3	ZmAffx.404.1.S1_at	At2g05830	-	-	3e+0	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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