Co-expression analysis

Gene ID	Ta.14479.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g05830: eukaryotic translation initiation factor 2B family protein / eIF-2B family protein (HF=7e-18)
Module size	6 genes
NF	0.49
%ile	75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.94	Ta.14479.3.S1_x_at	CA630294	-	-	7e-18	At2g05830	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.94	Ta.3083.2.A1_at	BJ254365	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.95	Ta.14146.3.S1_x_at	CA697368	-	-	2e+1	At5g24313	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.3478.3.S1_x_at	CA637826	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.94	Ta.2593.3.S1_x_at	CA665053	-	-	4e-1	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.25126.1.S1_at	CA705922	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.6	98.7	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0	97.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.9	94.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7	93.3	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.7	93.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the grape gene, 1614718_at, orthologous to the query gene, Ta.14479.3.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1614718_at	At2g05830	hypothetical protein LOC100264520	-	7e-11	At5g20700	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610618_at	At2g05830	hypothetical protein LOC100264520	-	3e-1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1611686_at	At2g05830	hypothetical protein LOC100255085	-	7e+0	At5g26080	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1606658_at	At2g05830	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1607788_at	At2g05830	hypothetical protein LOC100254226	-	7e-19	At5g11270	OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1615203_at	At2g05830	hypothetical protein LOC100258284	-	7e-2	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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