Co-expression analysis

Gene ID	Ta.14459.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g21070: FIO1 (FIONA1) (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.88	Ta.14459.1.S1_x_at	BJ218617	-	-	5e+0	At2g21070	FIO1 (FIONA1)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.82	Ta.25161.1.S1_x_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.82	Ta.25161.1.S1_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.12529.1.S1_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	Ta.12529.1.S1_x_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.82	Ta.6445.2.S1_x_at	CA594529	-	-	3e+0	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.6	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
15.3	99.6	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
14.7	99.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
13.3	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM111230	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM138192	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the maize gene, Zm.1353.1.A1_at, orthologous to the query gene, Ta.14459.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	Zm.1353.1.A1_at	At2g21070	PCO069699 protein	-	2e+0	At5g13900	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.4530.1.A1_at	At2g21070	hypothetical protein LOC100276667	-	1e-1	At5g33898	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.7937.1.A1_at	At2g21070	plant viral-response family protein	-	1e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.12656.1.S1_at	At2g21070	-	-	5e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.5665.1.A1_at	At2g21070	hypothetical protein LOC100277219	-	7e-2	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.3885.1.S1_at	At2g21070	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6686.2.A1_at	At2g21070	-	-	6e+0	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.5185.1.A1_at	At2g21070	hypothetical protein LOC100280305	-	1e-36	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.13774.1.A1_at	At2g21070	-	-	1e+1	Atmg00010	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.4278.1.A1_at	At2g21070	hypothetical protein LOC100279402	-	1e+1	At5g05550	transcription factor	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.19107.1.A1_at	At2g21070	hypothetical protein LOC100272386	-	8e-4	At1g15030	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.561.1.A1_at	At2g21070	glutathione transferase23	-	5e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.7569.1.A1_at	At2g21070	-	-	1e+0	At1g69880	ATH8 (thioredoxin H-type 8)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.3384.1.A1_x_at	At2g21070	subtilisin-chymotrypsin inhibitor CI-1B /// subtilisin-chymotrypsin inhibitor CI-1B	-	9e+0	At5g65687	transporter-related	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.6481.1.A1_at	At2g21070	-	-	7e-2	At4g16830	nuclear RNA-binding protein (RGGA)	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.17630.1.A1_at	At2g21070	-	-	4e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.13039.1.A1_at	At2g21070	hypothetical protein LOC100279827	-	7e+0	At4g37409	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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