Co-expression analysis

Gene ID	Ta.14459.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g21070: FIO1 (FIONA1) (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.88	Ta.14459.1.S1_x_at	BJ218617	-	-	5e+0	At2g21070	FIO1 (FIONA1)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.82	Ta.25161.1.S1_x_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.82	Ta.25161.1.S1_at	BQ578355	-	-	1e+1	At5g50375	CPI1 (CYCLOPROPYL ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.91	Ta.12529.1.S1_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.92	Ta.12529.1.S1_x_at	CK211211	-	-	4e+0	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.82	Ta.6445.2.S1_x_at	CA594529	-	-	3e+0	At4g01420	CBL5 (CALCINEURIN B-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.6	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
15.3	99.6	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
14.7	99.5	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.6	99.5	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
13.3	99.5	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM111230	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM138192	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2	94.8	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the grape gene, 1608091_at, orthologous to the query gene, Ta.14459.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	95.5	1608091_at	At2g21070	-	-	3e+0	At1g05085	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1618903_at	At2g21070	hypothetical protein LOC100248761	-	2e-2	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1614051_at	At2g21070	hypothetical protein LOC100266616	-	1e-14	At4g15470	-	O.I.	H.G.	S.X.	Please select
0.07	7.8	1619303_at	At2g21070	hypothetical protein LOC100245919	-	5e+0	At1g10155	ATPP2-A10 (PHLOEM PROTEIN 2-A10)	O.I.	H.G.	S.X.	Please select
0.06	6.8	1615760_at	At2g21070	hypothetical protein LOC100267064	-	7e-43	At5g55160	SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1615122_at	At2g21070	hypothetical protein LOC100249224	-	2e-115	At3g10660	CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1611908_at	At2g21070	hypothetical protein LOC100245921	-	2e+1	At5g06510	NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1610320_at	At2g21070	hypothetical protein LOC100248020	-	3e-1	At2g33310	IAA13	O.I.	H.G.	S.X.	Please select
0.02	3.2	1622571_at	At2g21070	hypothetical protein LOC100255631	-	3e-11	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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