CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.14459.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At2g21070: FIO1 (FIONA1) (HF=5e+0)

Module size 6 genes

NF 0.68

%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.2 0.88 Ta.14459.1.S1_x_at BJ218617 - - 5e+0 At2g21070 FIO1 (FIONA1) O.I. H.G. S.X.
0.91 98.2 0.82 Ta.25161.1.S1_x_at BQ578355 - - 1e+1 At5g50375 CPI1 (CYCLOPROPYL ISOMERASE) O.I. H.G. S.X.
0.91 98.2 0.82 Ta.25161.1.S1_at BQ578355 - - 1e+1 At5g50375 CPI1 (CYCLOPROPYL ISOMERASE) O.I. H.G. S.X.
0.80 92.2 0.91 Ta.12529.1.S1_at CK211211 - - 4e+0 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) O.I. H.G. S.X.
0.80 92.2 0.92 Ta.12529.1.S1_x_at CK211211 - - 4e+0 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) O.I. H.G. S.X.
0.30 40.9 0.82 Ta.6445.2.S1_x_at CA594529 - - 3e+0 At4g01420 CBL5 (CALCINEURIN B-LIKE PROTEIN 5) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.2 99.6 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
15.3 99.6 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
14.7 99.5 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
13.6 99.5 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
13.6 99.5 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
13.3 99.5 GSM314276 tissue type: pistil, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM138169 genotype B68 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8 96.0 GSM111230 genotype B33 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7 95.8 GSM138192 genotype B33 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.2 94.8 GSM138200 genotype F48 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

A co-expression module including the rice gene, Os12g0431300, orthologous to the query gene, Ta.14459.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os12g0431300 At2g21070 - Quinoprotein amine dehydrogenase, beta chain-likedomain containing protein 3e-1 At1g49110 unknown protein O.I. H.G. S.X.
0.44 58.1 Os08g0158400 At2g21070 - - 1e-2 At2g34790 MEE23 (MATERNAL EFFECT EMBRYO ARREST 23) O.I. H.G. S.X.
0.40 51.1 Os10g0439200 At2g21070 - Alpha-expansin OsEXPA25 1e-4 At2g37640 EXP3 O.I. H.G. S.X.
0.27 27.5 Os01g0641800 At2g21070 - AAA ATPase, central region domain containingprotein 5e-2 At3g55460 SCL30 O.I. H.G. S.X.
0.23 21.2 Os05g0524500 At2g21070 - Protein kinase domain containing protein 1e-4 At5g47070 protein kinase, putative O.I. H.G. S.X.
0.14 9.3 Os02g0770500 At2g21070 - WRKY transcription factor 32 3e-4 At5g22790 RER1 (RETICULATA-RELATED 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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