CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.14323.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g18593: dual specificity protein phosphatase-related (HF=1e+1)

Module size 6 genes

NF 0.79

%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.95 Ta.14323.1.S1_at BU100287 - - 1e+1 At4g18593 dual specificity protein phosphatase-related O.I. H.G. S.X.
0.80 92.2 0.93 Ta.11847.1.A1_at BQ170925 - - 1e+0 At1g49110 unknown protein O.I. H.G. S.X.
0.73 89.1 0.93 TaAffx.121733.1.S1_at BJ316403 - - 2e-3 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) O.I. H.G. S.X.
0.67 86.3 0.95 TaAffx.16068.1.S1_at BQ168935 - - 1e+0 At1g33260 protein kinase family protein O.I. H.G. S.X.
0.67 86.3 0.96 Ta.6965.1.S1_at BJ313225 - - 3e+0 At3g03847 auxin-responsive family protein O.I. H.G. S.X.
0.60 81.0 0.95 TaAffx.91428.1.S1_at BJ313181 - - 3e+0 At4g21450 vesicle-associated membrane family protein / VAMP family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.1 99.4 GSM314255 tissue type: germinating seed, root - rep2 GSE12508 Transcription patterns during wheat development
12.6 99.4 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
12.1 99.4 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
11.4 99.3 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
8.6 98.9 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
4.9 97.3 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8 93.6 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.8 93.6 GSM139928 Anther immature pollen rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6 92.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the barley gene, Contig18823_at, orthologous to the query gene, Ta.14323.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig18823_at At4g18593 - - 1e-2 At3g05290 PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1) O.I. H.G. S.X.
0.48 63.2 Contig6765_at At4g18593 - - 2e-25 At5g12860 DiT1 (dicarboxylate transporter 1) O.I. H.G. S.X.
0.43 56.4 Contig5144_at At4g18593 - - 7e-14 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase O.I. H.G. S.X.
0.38 49.5 rbags22i06_at At4g18593 - - 1e-3 At2g23140 binding / ubiquitin-protein ligase O.I. H.G. S.X.
0.38 49.5 Contig5295_at At4g18593 - - 2e-113 At2g27210 kelch repeat-containing serine/threonine phosphoesterase family protein O.I. H.G. S.X.
0.35 45.1 Contig6945_at At4g18593 - - 3e-12 At5g37850 SOS4 (SALT OVERLY SENSITIVE 4) O.I. H.G. S.X.
0.32 40.3 Contig8826_at At4g18593 - - 4e+0 At3g58830 haloacid dehalogenase (HAD) superfamily protein O.I. H.G. S.X.
0.29 35.5 Contig6946_at At4g18593 - - 1e-5 At5g01200 myb family transcription factor O.I. H.G. S.X.
0.26 30.4 Contig12065_at At4g18593 - - 1e+0 At5g61670 - O.I. H.G. S.X.
0.25 28.9 Contig4599_s_at At4g18593 - - 2e-1 At4g36740 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) O.I. H.G. S.X.
0.24 27.2 Contig12717_at At4g18593 - - 2e-4 At5g60990 DEAD/DEAH box helicase, putative (RH10) O.I. H.G. S.X.
0.24 27.2 Contig7725_at At4g18593 - - 8e-1 At1g22180 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.
0.22 24.2 Contig6569_at At4g18593 - - 1e-56 At5g36880 acetyl-CoA synthetase, putative / acetate-CoA ligase, putative O.I. H.G. S.X.
0.22 24.2 Contig10643_at At4g18593 - - 1e-1 At1g48140 dolichol-phosphate mannosyltransferase-related O.I. H.G. S.X.
0.16 15.3 Contig7848_at At4g18593 - - 3e-5 At3g22110 PAC1 O.I. H.G. S.X.
0.13 11.6 Contig12335_at At4g18593 - - 5e-20 At2g22120 protein binding / zinc ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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