Co-expression analysis

Gene ID Ta.14323.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g18593: dual specificity protein phosphatase-related (HF=1e+1)
Module size 6 genes
NF 0.79
%ile 96.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.95Ta.14323.1.S1_atBU100287--1e+1At4g18593dual specificity protein phosphatase-relatedO.I.H.G.S.X.
0.8092.20.93Ta.11847.1.A1_atBQ170925--1e+0At1g49110unknown proteinO.I.H.G.S.X.
0.7389.10.93TaAffx.121733.1.S1_atBJ316403--2e-3At3g52910AtGRF4 (GROWTH-REGULATING FACTOR 4)O.I.H.G.S.X.
0.6786.30.95TaAffx.16068.1.S1_atBQ168935--1e+0At1g33260protein kinase family proteinO.I.H.G.S.X.
0.6786.30.96Ta.6965.1.S1_atBJ313225--3e+0At3g03847auxin-responsive family proteinO.I.H.G.S.X.
0.6081.00.95TaAffx.91428.1.S1_atBJ313181--3e+0At4g21450vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.199.4GSM314255tissue type: germinating seed, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
12.699.4GSM314254tissue type: germinating seed, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
12.199.4GSM314260tissue type: seedling, root - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
11.499.3GSM314256tissue type: germinating seed, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.698.9GSM314261tissue type: seedling, root - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
4.997.3GSM314262tissue type: seedling, root - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.896.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.893.6GSM298087Crown tissue of Solstice at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM139928Anther immature pollen rep1GSE6027Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheatLink to GEO
2.692.9GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g18593, orthologous to the query gene, Ta.14323.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5673.0At4g18593827592dual specificity protein phosphatase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3846.7At1g21190838714small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MAOFPO.I.H.G.S.X.
0.3846.7At1g54140841854TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)putative TATA binding protein associated factor 21kDaO.I.H.G.S.X.
0.2624.4At5g49400835000zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVAO.I.H.G.S.X.
0.2522.6At5g30490833136-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.2115.8At1g68185843147ubiquitin-relatedF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2014.4At1g17070838277D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular;MOPFAVO.I.H.G.S.X.
0.2014.4At5g06910830582ATJ6 (Arabidopsis J-domain protein 6)DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.O.I.H.G.S.X.
0.1811.4At2g43280818930far-red impaired responsive family protein / FAR1 family proteinF:unknown;P:response to red or far red light;C:cellular_component unknown;PO.I.H.G.S.X.
0.157.8At3g18165821343MOS4 (Modifier of snc1,4)Encodes MOS4 (Modifier of snc1, 4), a nuclear protein homologous to human Breast Cancer-Amplified Sequence (BCAS2). MOS4 interacts with AtCDC5 and PRL1. All three proteins are essential for plant innate immunity.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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