Co-expression analysis

Gene ID	Ta.14183.1.S1_at
Gene name	hypothetical LOC543077
Homology with Arabidopsis	Similar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=2e-3)
Module size	6 genes
NF	0.78
%ile	96.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.98	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.98	Ta.14225.1.S1_x_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.80	92.2	0.98	TaAffx.128618.1.S1_at	BE586137	-	-	6e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.14225.3.S1_at	CA647891	-	-	7e-2	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.98	Ta.24301.1.A1_s_at	CA722368	-	-	4e+0	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.97	Ta.9666.3.S1_at	CA630209	-	-	3e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	99.5	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
11.9	99.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.5	99.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.1	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.0	99.0	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.7	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.5	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

A co-expression module including the soybean gene, Gma.15874.1.S1_at, orthologous to the query gene, Ta.14183.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	Gma.15874.1.S1_at	At3g44890	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.84	92.6	Gma.7972.1.S1_at	At3g44890	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.13099.1.S1_at	At3g44890	-	-	8e-12	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.17460.1.S1_s_at	At3g44890	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.7200.1.S1_at	At3g44890	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.7148.1.A1_at	At3g44890	-	-	9e-17	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.11178.1.S1_at	At3g44890	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.2305.1.S1_at	At3g44890	-	-	2e-19	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.4606.1.S1_at	At3g44890	-	-	9e-12	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	Gma.13001.2.S1_a_at	At3g44890	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.5851.3.S1_at	At3g44890	-	-	1e-11	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.1956.2.S1_a_at	At3g44890	-	-	2e-2	At5g25600	-	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.10595.1.S1_at	At3g44890	-	-	2e-40	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.3419.1.S1_at	At3g44890	-	-	4e-17	At3g25920	RPL15	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.10730.1.S1_at	At3g44890	-	-	1e-16	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.5413.3.S1_a_at	At3g44890	-	-	1e-9	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.5702.1.S1_a_at	At3g44890	-	-	1e-11	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.6.1.A1_at	At3g44890	ribosomal protein L22	-	1e-13	Atcg00810	-	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.91630.1.S1_s_at	At3g44890	-	-	4e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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