Co-expression analysis

Gene ID	Ta.14176.1.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g27690: heavy-metal-associated domain-containing protein (HF=2e-1)
Module size	26 genes
NF	0.32
%ile	51.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	0.94	Ta.14176.1.S1_a_at	BJ243591	-	-	2e-1	At5g27690	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.763.3.A1_x_at	CD453554	-	-	2e-6	At3g63490	ribosomal protein L1 family protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.97	Ta.21562.1.S1_at	CA696178	-	-	2e+1	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.41	59.6	0.95	Ta.12375.1.A1_at	BQ172208	-	-	1e-7	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.519.2.A1_s_at	CA709735	-	-	4e-4	At2g45770	CPFTSY	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.97	Ta.6077.1.S1_at	CA652767	-	-	4e-8	At3g26710	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)	O.I.	H.G.	S.X.	Please select
0.34	48.1	0.96	TaAffx.121229.1.A1_at	BG907240	-	-	3e-6	At4g15110	CYP97B3	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.12807.1.S1_at	AJ609693	-	-	7e+0	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.95	Ta.22791.1.S1_at	CD452557	-	-	2e-13	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.95	TaAffx.123979.1.S1_x_at	AJ614757	-	-	9e-1	At2g36840	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.97	Ta.10797.1.S1_at	CA628715	-	-	2e+0	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.123979.1.S1_at	AJ614757	-	-	9e-1	At2g36840	ACT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	TaAffx.40368.1.S1_at	BJ286729	-	-	2e-2	At1g68730	zinc finger (DNL type) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.96	TaAffx.78201.1.S1_at	CA736140	-	-	2e-10	At1g67440	emb1688 (embryo defective 1688)	O.I.	H.G.	S.X.	Please select
0.30	40.9	0.95	Ta.4721.1.S1_at	BJ240050	-	-	9e-7	At5g10470	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.96	Ta.7025.1.S1_at	CD452776	-	-	4e-6	At2g45270	glycoprotease M22 family protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	0.95	Ta.30586.1.S1_s_at	CA680631	-	-	3e-12	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.18333.2.S1_a_at	CA664199	-	-	1e-21	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.96	Ta.5630.1.S1_at	CA722185	-	-	2e-7	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select
0.26	33.6	0.95	Ta.15546.1.S1_at	CA724976	-	-	1e+1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.95	Ta.28242.1.S1_at	CK216078	-	-	3e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.23665.1.S1_at	X14348.1	ADP-glucose pyrophosophorylase	-	4e-23	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.417.1.S1_at	BG910137	-	-	3e-9	At4g39960	DNAJ heat shock family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.95	Ta.19995.1.S1_at	CD904171	-	-	3e+0	At4g39890	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	O.I.	H.G.	S.X.	Please select
0.22	27.1	0.96	Ta.8056.1.A1_at	BQ161194	-	-	8e-4	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.97	TaAffx.114768.1.S1_at	CA617363	-	-	2e-6	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	98.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.2	97.5	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.0	97.4	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
4.6	97.0	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.4	95.2	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage