Co-expression analysis

Gene ID	Ta.14073.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g09430: ACLA-3 (HF=5e-36)
Module size	6 genes
NF	0.65
%ile	89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.97	Ta.14073.1.S1_at	BJ228415	-	-	5e-36	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.96	Ta.9211.2.A1_a_at	CD879802	-	-	5e+0	At4g23170	EP1	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.1717.1.S1_at	CD452698	-	-	1e-2	At1g55320	AAE18 (ACYL-ACTIVATING ENZYME 18)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.1717.1.S1_x_at	CD452698	-	-	1e-2	At1g55320	AAE18 (ACYL-ACTIVATING ENZYME 18)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.97	Ta.14073.1.S1_x_at	BJ228415	-	-	5e-36	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.97	Ta.9211.2.A1_x_at	CD879802	-	-	5e+0	At4g23170	EP1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	99.2	GSM139925	Anther tetrads rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9	99.1	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0	98.0	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8	97.9	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2	97.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5	96.9	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.138813.1.A1_s_at, orthologous to the query gene, Ta.14073.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	73.7	PtpAffx.138813.1.A1_s_at	At1g09430	hypothetical protein	-	3e-104	At1g09430	ACLA-3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	Ptp.5413.1.S1_s_at	At1g09430	methylenetetrahydrofolate reductase	-	2e-28	At2g44160	MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.21035.2.S1_a_at	At1g09430	hypothetical protein	-	1e-96	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.6276.1.S1_at	At1g09430	hypothetical protein	-	1e-4	At3g44340	CEF (clone eighty-four)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.2315.1.S1_at	At1g09430	hypothetical protein	-	9e-31	At4g12650	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.159811.1.A1_s_at	At1g09430	-	-	2e-1	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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