CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.14073.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g09430: ACLA-3 (HF=5e-36)

Module size 6 genes

NF 0.65

%ile 89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.97 Ta.14073.1.S1_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.73 89.1 0.96 Ta.9211.2.A1_a_at CD879802 - - 5e+0 At4g23170 EP1 O.I. H.G. S.X.
0.67 86.3 0.97 Ta.1717.1.S1_at CD452698 - - 1e-2 At1g55320 AAE18 (ACYL-ACTIVATING ENZYME 18) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.1717.1.S1_x_at CD452698 - - 1e-2 At1g55320 AAE18 (ACYL-ACTIVATING ENZYME 18) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.14073.1.S1_x_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.46 66.8 0.97 Ta.9211.2.A1_x_at CD879802 - - 5e+0 At4g23170 EP1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.1 99.2 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9 99.1 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0 98.0 GSM139924 Anther telophaseI-telophaseII rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8 97.9 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2 97.5 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5 96.9 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7 95.8 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5458.1.S1_at, orthologous to the query gene, Ta.14073.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.36 50.8 Gma.5458.1.S1_at At1g09430 - - 4e-114 At1g10670 ACLA-1 O.I. H.G. S.X.
0.71 87.8 Gma.3107.1.S1_at At1g09430 - - 1e-97 At5g62790 DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) O.I. H.G. S.X.
0.67 86.1 Gma.10455.1.S1_at At1g09430 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.59 79.5 GmaAffx.90026.1.S1_s_at At1g09430 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.57 78.8 Gma.6602.2.S1_s_at At1g09430 - - 4e-103 At5g16440 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) O.I. H.G. S.X.
0.48 67.7 Gma.1689.1.S1_s_at At1g09430 6-phosphogluconate dehydrogenase - 1e-114 At3g02360 6-phosphogluconate dehydrogenase family protein O.I. H.G. S.X.
0.41 58.1 GmaAffx.68141.1.S1_at At1g09430 - - 1e-13 At2g19860 HXK2 (HEXOKINASE 2) O.I. H.G. S.X.
0.40 57.1 Gma.11238.1.S1_at At1g09430 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.19 23.7 Gma.16706.1.S1_s_at At1g09430 - - 6e-20 At3g60100 CSY5 (citrate synthase 5) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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