CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.14073.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g09430: ACLA-3 (HF=5e-36)

Module size 6 genes

NF 0.65

%ile 89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.97 Ta.14073.1.S1_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.73 89.1 0.96 Ta.9211.2.A1_a_at CD879802 - - 5e+0 At4g23170 EP1 O.I. H.G. S.X.
0.67 86.3 0.97 Ta.1717.1.S1_at CD452698 - - 1e-2 At1g55320 AAE18 (ACYL-ACTIVATING ENZYME 18) O.I. H.G. S.X.
0.67 86.3 0.97 Ta.1717.1.S1_x_at CD452698 - - 1e-2 At1g55320 AAE18 (ACYL-ACTIVATING ENZYME 18) O.I. H.G. S.X.
0.50 72.4 0.97 Ta.14073.1.S1_x_at BJ228415 - - 5e-36 At1g09430 ACLA-3 O.I. H.G. S.X.
0.46 66.8 0.97 Ta.9211.2.A1_x_at CD879802 - - 5e+0 At4g23170 EP1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.1 99.2 GSM139925 Anther tetrads rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
9.9 99.1 GSM139927 Anther tetrads rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.0 98.0 GSM139924 Anther telophaseI-telophaseII rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.8 97.9 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
5.2 97.5 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.5 96.9 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7 95.8 GSM139930 Anther immature pollen rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4 95.2 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2 94.8 GSM139926 Anther tetrads rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g09430, orthologous to the query gene, Ta.14073.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.33 38.1 At1g09430 837466 ACLA-3 Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. O.I. H.G. S.X.
0.23 19.3 At4g32040 829335 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. O.I. H.G. S.X.
0.13 5.8 At5g18110 831929 NCBP (NOVEL CAP-BINDING PROTEIN) F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFP O.I. H.G. S.X.
0.13 5.8 At4g21450 826300 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBV O.I. H.G. S.X.
0.09 2.8 At3g55770 824743 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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