Co-expression analysis

Gene ID	Ta.1391.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g24090: ribosomal protein L35 family protein (HF=9e-11)
Module size	12 genes
NF	0.43
%ile	68.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	94.4	0.86	Ta.1391.2.S1_at	CK211679	-	-	9e-11	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	0.86	Ta.6578.3.A1_at	BJ308193	-	-	1e+0	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.87	Ta.578.1.S1_at	BE489213	-	-	9e-1	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.89	Ta.17974.1.A1_at	CA623388	-	-	4e-11	At1g56045	ribosomal protein L41 family protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	0.86	TaAffx.29059.1.S1_x_at	CA651336	-	-	1e+0	At1g61520	LHCA3	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.86	TaAffx.131855.1.S1_at	CA695496	-	-	6e+0	At3g01516	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.92	TaAffx.86236.1.S1_at	CA613373	-	-	3e-1	At2g22260	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.91	Ta.1391.2.S1_x_at	CK211679	-	-	9e-11	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	0.92	Ta.834.3.S1_x_at	BQ608659	-	-	1e+0	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.93	TaAffx.83374.1.S1_at	CA658276	-	-	2e-1	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.91	TaAffx.78900.2.S1_s_at	CA725224	-	-	1e+1	At5g17073	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.91	TaAffx.117130.1.S1_at	BQ609707	-	-	3e-1	At5g21910	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
11.0	99.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.2	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.9	99.1	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
7.5	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.8	98.4	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4	98.2	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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