Co-expression analysis

Gene ID	Ta.13841.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g14680: CYP72A14 (HF=6e-5)
Module size	6 genes
NF	0.38
%ile	60.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.9	0.95	Ta.13841.1.S1_at	AJ440511	-	-	6e-5	At3g14680	CYP72A14	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.8859.1.S1_at	BQ162524	-	-	2e-1	At4g39950	CYP79B2	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	TaAffx.59343.1.S1_at	CA602787	-	-	4e+0	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	0.96	Ta.25113.1.S1_at	CA603697	-	-	1e+1	At3g12880	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.96	Ta.5322.1.S1_at	BJ285768	-	-	9e-3	At1g80120	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.96	TaAffx.3210.1.S1_at	BQ236874	-	-	4e-2	At3g07700	ABC1 family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.0	96.3	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.7	95.8	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.5	95.4	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM138177	genotype A40 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8	93.6	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.7	93.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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