Co-expression analysis

Gene ID	Ta.1382.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g27720: - (HF=3e-10)
Module size	8 genes
NF	0.23
%ile	38.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	0.95	Ta.1382.3.S1_a_at	CA637786	-	-	3e-10	At4g27720	-	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.96	Ta.1382.1.S1_x_at	BQ237866	-	-	8e-23	At1g64650	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.96	Ta.28368.1.S1_x_at	CK206492	Type 1 non-specific lipid transfer protein precursor	-	8e+0	At5g63087	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.95	Ta.8906.1.A1_at	BQ162610	-	-	6e-3	At1g56670	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	0.95	Ta.28368.2.S1_at	CB307729	Type 1 non specific lipid transfer protein precursor	-	2e+0	At4g22250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.96	Ta.9344.1.S1_at	CD917189	-	-	1e-12	At1g27440	GUT2	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.96	Ta.23696.2.S1_a_at	BJ216741	-	-	7e-2	At1g77630	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	0.95	Ta.28715.1.S1_at	CD930968	-	-	2e-36	At5g35160	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.9	99.0	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM298082	Leaf tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
3.6	95.6	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage