Co-expression analysis

Gene ID	Ta.13721.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g42630: ATS (ABERRANT TESTA SHAPE) (HF=1e+1)
Module size	6 genes
NF	0.45
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.1	0.98	Ta.13721.2.S1_x_at	CA708836	-	-	1e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.3990.1.S1_at	BJ262866	-	-	2e-5	At1g67930	Golgi transport complex protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.98	Ta.13721.1.S1_s_at	CK198418	-	-	7e-7	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.99	Ta.13721.1.S1_x_at	CK198418	-	-	7e-7	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.21119.1.S1_a_at	CD915118	-	-	3e-3	At3g63000	NPL41 (NPL4-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.23	29.0	0.98	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.6	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.4	95.2	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
2.5	92.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM138159	genotype F36 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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