Co-expression analysis

Gene ID	Ta.1364.1.S1_at
Gene name	geranylgeranyl hydrogenase
Homology with Arabidopsis	Similar to At1g74470: geranylgeranyl reductase (HF=4e-6)
Module size	16 genes
NF	0.67
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.4	0.95	Ta.1364.1.S1_at	BJ219908	geranylgeranyl hydrogenase	-	4e-6	At1g74470	geranylgeranyl reductase	O.I.	H.G.	S.X.	Please select
0.90	94.8	0.97	Ta.27751.7.A1_x_at	BG908738	-	-	6e-25	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.79	91.3	0.96	Ta.2752.2.S1_x_at	BE216923	-	-	6e-13	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Ta.2752.3.S1_x_at	BJ266715	ribulosebisphosphate carboxylase small subunit	-	8e-12	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.98	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.69	86.9	0.96	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.98	Ta.506.1.S1_a_at	BJ265323	-	-	6e-48	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.1130.2.S1_x_at	CK212780	-	-	5e-26	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.65	83.9	0.98	Ta.30727.1.S1_at	CD873777	-	-	1e-39	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.97	Ta.3258.1.S1_at	CK208157	-	-	2e-4	At5g54190	PORA	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	Ta.27751.6.S1_at	BJ286005	-	-	1e-28	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.97	Ta.1969.1.S1_a_at	BE216986	-	-	5e-7	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.97	Ta.28714.1.S1_at	CK216318	Thiol-specific antioxidant protein	-	3e-77	At3g11630	2-cys peroxiredoxin, chloroplast (BAS1)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.98	Ta.27751.2.S1_x_at	CK214731	-	-	4e-27	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.98	Ta.1130.1.S1_a_at	BG907492	-	-	2e-7	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
54.0	99.9	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
8.3	98.8	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.2	98.1	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.5	96.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM139926	Anther tetrads rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7	95.8	GSM139930	Anther immature pollen rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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