Co-expression analysis

Gene ID	Ta.13301.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g05497: F-box family protein (HF=5e+0)
Module size	6 genes
NF	0.01
%ile	1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.74	Ta.13301.1.S1_at	BQ483523	-	-	5e+0	At4g05497	F-box family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.4578.1.S1_x_at	BJ268224	-	-	2e+0	At5g03170	FLA11	O.I.	H.G.	S.X.	Please select
0.01	2.4	0.93	Ta.25248.1.A1_at	CD454523	-	-	2e+0	Atmg01090	-	O.I.	H.G.	S.X.	Please select
-	0.7	0.91	Ta.4614.1.A1_at	BJ273705	-	-	3e-5	At4g12780	heat shock protein binding	O.I.	H.G.	S.X.	Please select
-	0.7	0.92	TaAffx.1292.1.A1_at	CA701958	-	-	1e+0	At4g17010	unknown protein	O.I.	H.G.	S.X.	Please select
-	0.7	0.92	TaAffx.38546.1.A1_at	BJ219894	-	-	1e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
8.8	98.9	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.4	97.7	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
5.1	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
4.8	97.2	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.33885.1.S1_at, orthologous to the query gene, Ta.13301.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	PtpAffx.33885.1.S1_at	At4g05497	-	-	4e+0	At2g25344	LCR14 (Low-molecular-weight cysteine-rich 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	Ptp.2048.3.A1_a_at	At4g05497	hypothetical protein	-	2e-8	At4g00752	UBX domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.50167.2.S1_at	At4g05497	hypothetical protein	-	9e-6	At5g01580	OSH1 (OAS HIGH ACCUMULATION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.200532.1.S1_at	At4g05497	hypothetical protein	-	3e+0	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.37085.1.A1_at	At4g05497	hypothetical protein	-	1e+0	At3g18715	IDL4 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.45544.1.S1_at	At4g05497	-	-	9e-1	At1g08770	PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.151626.1.A1_at	At4g05497	hypothetical protein	-	9e-16	At1g68140	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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