CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.13301.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g05497: F-box family protein (HF=5e+0)

Module size 6 genes

NF 0.01

%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.74 Ta.13301.1.S1_at BQ483523 - - 5e+0 At4g05497 F-box family protein O.I. H.G. S.X.
0.01 2.4 0.93 Ta.4578.1.S1_x_at BJ268224 - - 2e+0 At5g03170 FLA11 O.I. H.G. S.X.
0.01 2.4 0.93 Ta.25248.1.A1_at CD454523 - - 2e+0 Atmg01090 - O.I. H.G. S.X.
- 0.7 0.91 Ta.4614.1.A1_at BJ273705 - - 3e-5 At4g12780 heat shock protein binding O.I. H.G. S.X.
- 0.7 0.92 TaAffx.1292.1.A1_at CA701958 - - 1e+0 At4g17010 unknown protein O.I. H.G. S.X.
- 0.7 0.92 TaAffx.38546.1.A1_at BJ219894 - - 1e+0 At2g35090 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.2 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.8 98.9 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.4 97.7 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the rice gene, Os11g0303100, orthologous to the query gene, Ta.13301.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 Os11g0303100 At4g05497 - Herbicide safener binding protein 2e+0 At5g52740 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.83 95.8 Os03g0842000 At4g05497 - - 4e+0 At2g12945 unknown protein O.I. H.G. S.X.
0.73 91.1 Os07g0404750 At4g05497 - - 4e+0 At4g22440 unknown protein O.I. H.G. S.X.
0.73 91.1 Os03g0678500 At4g05497 - - 5e-1 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative O.I. H.G. S.X.
0.67 87.2 Os04g0118800 At4g05497 - Disease resistance protein family protein 1e-1 At4g08570 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.59 78.0 Os12g0421300 At4g05497 - - 6e-1 At1g12830 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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