CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.13301.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g05497: F-box family protein (HF=5e+0)

Module size 6 genes

NF 0.01

%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 0.74 Ta.13301.1.S1_at BQ483523 - - 5e+0 At4g05497 F-box family protein O.I. H.G. S.X.
0.01 2.4 0.93 Ta.4578.1.S1_x_at BJ268224 - - 2e+0 At5g03170 FLA11 O.I. H.G. S.X.
0.01 2.4 0.93 Ta.25248.1.A1_at CD454523 - - 2e+0 Atmg01090 - O.I. H.G. S.X.
- 0.7 0.91 Ta.4614.1.A1_at BJ273705 - - 3e-5 At4g12780 heat shock protein binding O.I. H.G. S.X.
- 0.7 0.92 TaAffx.1292.1.A1_at CA701958 - - 1e+0 At4g17010 unknown protein O.I. H.G. S.X.
- 0.7 0.92 TaAffx.38546.1.A1_at BJ219894 - - 1e+0 At2g35090 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.2 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
8.8 98.9 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
6.1 98.1 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
5.4 97.7 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.2 97.5 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM314285 tissue type: 22 DAP embryo - rep2 GSE12508 Transcription patterns during wheat development
5.1 97.5 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.0 97.4 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
4.8 97.2 GSM314284 tissue type: 22 DAP embryo - rep1 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8247.1.S1_s_at, orthologous to the query gene, Ta.13301.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 89.2 Gma.8247.1.S1_s_at At4g05497 - - 3e+0 At5g62120 ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23) O.I. H.G. S.X.
0.48 67.7 Gma.17090.1.A1_at At4g05497 - - 3e+0 At5g18940 Mo25 family protein O.I. H.G. S.X.
0.44 63.3 Gma.9695.1.S1_at At4g05497 - - 1e+0 At1g76230 unknown protein O.I. H.G. S.X.
0.38 53.3 Gma.17820.1.A1_at At4g05497 - - 1e+0 At2g16740 UBC29 (ubiquitin-conjugating enzyme 29) O.I. H.G. S.X.
0.35 48.6 GmaAffx.28978.1.S1_at At4g05497 - - 4e-17 At5g16150 PGLCT (PLASTIDIC GLC TRANSLOCATOR) O.I. H.G. S.X.
0.32 43.7 GmaAffx.82536.1.S1_at At4g05497 - - 3e+0 At1g26665 - O.I. H.G. S.X.
0.30 40.4 Gma.8000.1.A1_at At4g05497 - - 5e-1 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) O.I. H.G. S.X.
0.27 35.7 Gma.8938.1.S1_at At4g05497 - - 3e+0 At1g80865 unknown protein O.I. H.G. S.X.
0.26 33.9 GmaAffx.31234.1.A1_at At4g05497 - - 8e-10 At5g45780 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.22 28.1 Gma.2990.1.A1_at At4g05497 - - 8e-2 At2g33590 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.20 25.1 GmaAffx.31809.1.S1_at At4g05497 - - 3e-19 At4g17610 tRNA/rRNA methyltransferase (SpoU) family protein O.I. H.G. S.X.
0.14 17.5 GmaAffx.34646.1.S1_at At4g05497 - - 3e-17 At5g53460 GLT1 O.I. H.G. S.X.
0.12 15.1 Gma.15767.1.S1_at At4g05497 - - 3e+0 At3g58890 syntaxin-related family protein O.I. H.G. S.X.
0.12 15.1 Gma.2172.2.S1_a_at At4g05497 - - 1e-145 At1g55360 unknown protein O.I. H.G. S.X.
0.11 14.2 Gma.7452.1.A1_at At4g05497 - - 3e-1 At5g04220 SYTC O.I. H.G. S.X.
0.10 13.0 GmaAffx.40997.1.S1_at At4g05497 - - 2e+0 At1g70680 caleosin-related family protein O.I. H.G. S.X.
0.10 13.0 GmaAffx.67847.1.S1_at At4g05497 - - 1e+1 At5g52547 unknown protein O.I. H.G. S.X.
0.09 12.0 Gma.7794.1.A1_at At4g05497 - - 1e+0 At3g05540 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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