Co-expression analysis

Gene ID Ta.13247.1.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At1g47240: NRAMP2 (HF=9e-9)
Module size 6 genes
NF 0.42
%ile 66.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.20.93Ta.13247.1.S1_a_atCK198318--9e-9At1g47240NRAMP2O.I.H.G.S.X.
0.4464.50.96Ta.22212.1.S1_atCA730396--2e+0At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.3651.90.94Ta.29505.1.S1_x_atCK196483--7e+0At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.3346.90.94Ta.25522.1.S1_atCK197714--6e-1At1g10360ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)O.I.H.G.S.X.
0.3142.70.94Ta.5210.2.S1_atBQ168369--4e-2At2g02020proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2939.20.94Ta.13247.2.S1_a_atCA646751--5e-6At1g47240NRAMP2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.099.0GSM143506Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
6.598.3GSM143505Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
6.298.1GSM143507Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
4.997.3GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.797.1GSM250914Tc_7dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.396.7GSM143515Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.896.0GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.595.4GSM143518Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.495.2GSM143517Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3GSE6227Expression data from rust or mock inoculated, fully expanded flag leaf halvesLink to GEO
3.395.0GSM250912TcLr34_7dpi_inoculated_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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