Co-expression analysis

Gene ID	Ta.13194.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g29034: unknown protein (HF=4e-3)
Module size	20 genes
NF	0.55
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.0	0.93	Ta.13194.1.S1_at	BJ266127	-	-	4e-3	At3g29034	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.96	Ta.2429.2.S1_x_at	CK215557	-	-	5e+0	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.70	87.2	0.96	Ta.1381.2.S1_at	BQ172233	-	-	2e+0	At3g07480	electron carrier/ iron-sulfur cluster binding	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.96	Ta.2429.2.S1_a_at	CK215557	-	-	5e+0	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.96	Ta.28888.1.S1_at	CA617384	-	-	4e-5	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	0.97	Ta.1381.2.S1_x_at	BQ172233	-	-	2e+0	At3g07480	electron carrier/ iron-sulfur cluster binding	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.96	Ta.28895.1.S1_s_at	AY217751.1	-	-	2e-19	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.13250.2.S1_x_at	CK158867	-	-	7e-4	At5g20720	CPN20 (CHAPERONIN 20)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.95	Ta.13731.1.S1_at	AY217753.1	-	-	6e-29	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.96	Ta.4910.1.S1_at	BJ228955	-	-	3e-13	At5g63570	GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE)	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.95	Ta.2076.1.S1_at	CK215984	-	-	2e-7	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.96	Ta.1378.1.S1_at	CK158480	-	-	2e+0	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.96	Ta.7770.1.S1_a_at	BJ321836	-	-	2e+0	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	Ta.1964.1.S1_x_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	0.96	Ta.1964.1.S1_a_at	CD890475	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.96	Ta.621.2.S1_x_at	CK211230	-	-	8e+0	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.45	65.2	0.95	Ta.7649.3.A1_a_at	BQ161111	-	-	6e-3	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.3100.2.S1_x_at	CA619410	-	-	1e-3	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.96	Ta.3100.2.S1_at	CA619410	-	-	1e-3	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.7649.1.S1_x_at	BJ242983	-	-	2e-4	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.6	98.7	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.5	98.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.1	98.5	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.0	98.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.2	98.1	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
5.7	97.9	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.2	97.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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