Co-expression analysis

Gene ID	Ta.13125.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g59380: FTA (FARNESYLTRANSFERASE A) (HF=2e+0)
Module size	6 genes
NF	0.10
%ile	21.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.79	Ta.13125.1.S1_at	CD490995	-	-	2e+0	At3g59380	FTA (FARNESYLTRANSFERASE A)	O.I.	H.G.	S.X.	Please select
0.19	22.4	0.94	Ta.26661.1.A1_at	CD491498	-	-	4e-10	At5g19760	dicarboxylate/tricarboxylate carrier (DTC)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.94	TaAffx.38217.1.S1_at	BJ244494	-	-	7e+0	At5g11690	ATTIM17-3	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.88	Ta.6548.2.S1_a_at	BJ307506	-	-	4e+0	At5g07930	MCT2 (mei2 C-Terminal RRM only like 2)	O.I.	H.G.	S.X.	Please select
0.06	7.6	0.91	Ta.8093.2.S1_a_at	CA615237	-	-	1e-12	At5g65760	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	0.94	TaAffx.118620.1.S1_at	BJ316617	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	97.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.6	97.0	GSM250907	Tc_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298053	Leaf tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.2	94.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.5315.1.A1_s_at, orthologous to the query gene, Ta.13125.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	PtpAffx.5315.1.A1_s_at	At3g59380	hypothetical protein	-	1e-90	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.14802.1.A1_s_at	At3g59380	hypothetical protein	-	5e-62	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.5633.1.S1_x_at	At3g59380	-	-	9e-37	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.5633.1.S1_at	At3g59380	hypothetical protein	-	9e-37	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.11485.3.A1_x_at	At3g59380	hypothetical protein	-	9e-23	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.18640.1.A1_s_at	At3g59380	hypothetical protein	-	3e-45	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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