Co-expression analysis

Gene ID	Ta.1305.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At1g13950: ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) (HF=9e-60)
Module size	6 genes
NF	0.31
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.96	Ta.1305.2.S1_x_at	BJ291943	-	-	9e-60	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.96	Ta.4062.1.S1_x_at	CA703978	-	-	2e-1	At4g38420	sks9 (SKU5 Similar 9)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.98	Ta.1305.1.S1_a_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.25	32.1	0.97	Ta.1305.1.S1_x_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	0.97	Ta.21349.2.S1_x_at	CA613683	-	-	2e+0	At4g30260	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	0.96	Ta.28355.1.S1_x_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6	95.6	GSM138202	genotype F44 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0	94.3	GSM111246	genotype H10 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9	94.0	GSM111210	genotype B11 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8	93.6	GSM138159	genotype F36 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6	92.9	GSM138137	Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.5	92.5	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM111234	genotype F44 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

A co-expression module including the grape gene, 1607236_at, orthologous to the query gene, Ta.1305.2.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1607236_at	At1g13950	-	-	2e-46	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	1619587_at	At1g13950	-	-	1e-9	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621849_at	At1g13950	hypothetical protein LOC100249556	-	2e-5	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1606971_at	At1g13950	-	-	4e-63	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610463_at	At1g13950	hypothetical protein LOC100246159	-	1e-53	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1620727_at	At1g13950	-	-	2e-11	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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