CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.1305.2.S1_x_at

Gene name
Homology with Arabidopsis Similar to At1g13950: ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) (HF=9e-60)

Module size 6 genes

NF 0.31

%ile 51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 83.1 0.96 Ta.1305.2.S1_x_at BJ291943 - - 9e-60 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.39 56.1 0.96 Ta.4062.1.S1_x_at CA703978 - - 2e-1 At4g38420 sks9 (SKU5 Similar 9) O.I. H.G. S.X.
0.33 46.9 0.98 Ta.1305.1.S1_a_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.25 32.1 0.97 Ta.1305.1.S1_x_at CK154793 - - 2e-65 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.24 30.3 0.97 Ta.21349.2.S1_x_at CA613683 - - 2e+0 At4g30260 integral membrane Yip1 family protein O.I. H.G. S.X.
0.20 24.0 0.96 Ta.28355.1.S1_x_at CA722170 - - 5e-19 At5g43940 HOT5 (sensitive to hot temperatures 5) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.2 96.6 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.7 95.8 GSM138210 genotype B65 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.6 95.6 GSM138202 genotype F44 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4 95.2 GSM138184 genotype C25 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.0 94.3 GSM111246 genotype H10 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9 94.0 GSM111210 genotype B11 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM138159 genotype F36 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM138137 Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.5 92.5 GSM138211 genotype B65 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5 92.5 GSM111234 genotype F44 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g13950, orthologous to the query gene, Ta.1305.2.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At1g13950 837955 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. O.I. H.G. S.X.
0.36 43.6 At4g01480 827962 AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5) Encodes a protein that might have inorganic pyrophosphatase activity. O.I. H.G. S.X.
0.33 38.1 At1g63220 842627 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.18 11.4 At1g23750 838985 DNA-binding protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PAO O.I. H.G. S.X.
0.11 4.1 At2g02960 814825 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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