Co-expression analysis

Gene ID	Ta.12870.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04480: 60S ribosomal protein L23 (RPL23A) (HF=8e-52)
Module size	20 genes
NF	0.58
%ile	84.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.98	Ta.12870.1.S1_at	BJ322687	-	-	8e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.78	91.1	0.99	Ta.28317.1.S1_x_at	BQ806898	-	-	9e-12	At1g33120	60S ribosomal protein L9 (RPL90B)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.24826.3.S1_at	BJ263115	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.99	Ta.22961.1.S1_a_at	BJ299675	-	-	3e-20	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.99	Ta.2605.2.S1_at	BJ226329	-	-	1e-16	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.99	Ta.24826.3.S1_x_at	BJ263115	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.61	82.0	0.99	Ta.28713.1.S1_at	CD927880	-	-	7e-9	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.99	Ta.1335.1.S1_at	BQ842066	-	-	4e-85	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.58	79.2	0.99	Ta.14324.1.S1_x_at	CA726094	-	-	1e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.99	Ta.1335.1.S1_x_at	BQ842066	-	-	4e-85	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.99	Ta.27765.4.S1_x_at	BJ231799	Ribosomal protein L39	-	3e-20	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.99	Ta.28308.1.S1_at	BJ217291	-	-	2e-15	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.99	Ta.28257.1.S1_x_at	CK210991	-	-	6e-19	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.54	75.5	0.99	Ta.30787.1.S1_at	BQ802485	-	-	6e-38	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.99	Ta.28341.1.S1_at	BJ272630	-	-	5e-1	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.	Please select
0.51	73.0	0.99	Ta.27765.3.S1_x_at	CD925325	Ribosomal protein L39	-	7e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.99	Ta.14324.3.S1_x_at	BJ228983	-	-	1e-3	At5g27700	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.99	Ta.28713.1.S1_x_at	CD927880	-	-	7e-9	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.99	Ta.659.5.S1_at	CD878955	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.99	Ta.28739.1.S1_x_at	BJ246370	-	-	8e-2	At3g07230	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.8	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
7.2	98.5	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298086	Crown tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.4	92.0	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
2.3	91.5	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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