Co-expression analysis

Gene ID	Ta.12796.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g01990: auxin efflux carrier family protein (HF=8e-16)
Module size	6 genes
NF	0.19
%ile	33.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	0.95	Ta.12796.1.S1_s_at	BE430492	-	-	8e-16	At5g01990	auxin efflux carrier family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	0.95	Ta.12796.2.S1_s_at	CA628522	-	-	2e-3	At5g56550	OXS3 (OXIDATIVE STRESS 3)	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.95	Ta.16999.1.S1_x_at	CA648819	-	-	8e-6	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.14	15.8	0.95	Ta.8034.1.A1_at	BQ161157	-	-	2e-3	At3g56480	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.95	Ta.25251.1.S1_at	CD373624	-	-	2e-20	At5g13640	ATPDAT	O.I.	H.G.	S.X.	Please select
0.08	9.4	0.95	Ta.12682.1.A1_at	BQ170634	-	-	1e+0	At3g22210	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.5	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.3	96.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM314263	tissue type: seedling, crown - rep1	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1	94.5	GSM250915	TcLr1_7dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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