Co-expression analysis

Gene ID	Ta.12753.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g18130: tRNA synthetase-related / tRNA ligase-related (HF=5e+0)
Module size	6 genes
NF	0.69
%ile	92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.0	0.97	Ta.12753.1.S1_at	CD926424	-	-	5e+0	At1g18130	tRNA synthetase-related / tRNA ligase-related	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.6416.1.S1_at	CK154083	-	-	5e-15	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	TaAffx.71607.1.A1_at	CK208297	-	-	2e+1	At3g14670	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.97	Ta.14062.1.S1_a_at	CK156520	-	-	1e-1	At1g67840	CSK (CHLOROPLAST SENSOR KINASE)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.98	Ta.14062.2.S1_a_at	BJ218508	-	-	1e+0	At2g30615	-	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.97	Ta.21957.1.S1_at	CK212193	-	-	6e+0	At2g21185	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.0	94.3	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.7	93.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.7	93.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.6	92.9	GSM143523	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
2.5	92.5	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.5	92.5	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage