Co-expression analysis

Gene ID	Ta.1275.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g13830: J20 (DNAJ-LIKE 20) (HF=4e+0)
Module size	6 genes
NF	0.29
%ile	47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	46.9	0.87	Ta.1275.3.S1_a_at	CA611468	-	-	4e+0	At4g13830	J20 (DNAJ-LIKE 20)	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.89	Ta.3840.1.S1_at	CD919677	-	-	4e-5	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	0.89	Ta.1275.1.S1_at	CA619292	-	-	1e+1	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.90	Ta.20649.1.S1_x_at	BU100263	-	-	7e-11	At1g68020	ATTPS6	O.I.	H.G.	S.X.	Please select
0.21	25.5	0.90	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.89	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.2	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.9	98.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
6.8	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.5638.1.S1_at, orthologous to the query gene, Ta.1275.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	Zm.5638.1.S1_at	At4g13830	hypothetical protein LOC100193735	-	2e-1	At3g07830	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.6415.1.A1_at	At4g13830	-	-	4e-3	At2g45730	eukaryotic initiation factor 3 gamma subunit family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.600.1.S1_at	At4g13830	plasma membrane intrinsic protein	-	9e-34	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.6322.1.A1_at	At4g13830	hypothetical protein LOC100279236	-	3e-8	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.6442.1.S1_at	At4g13830	hypothetical protein LOC100279807	-	2e-32	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.4336.1.S1_at	At4g13830	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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