Co-expression analysis

Gene ID Ta.1275.3.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At4g13830: J20 (DNAJ-LIKE 20) (HF=4e+0)
Module size 6 genes
NF 0.29
%ile 47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3346.90.87Ta.1275.3.S1_a_atCA611468--4e+0At4g13830J20 (DNAJ-LIKE 20)O.I.H.G.S.X.
0.3346.90.89Ta.3840.1.S1_atCD919677--4e-5At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.3244.40.89Ta.1275.1.S1_atCA619292--1e+1At2g36100integral membrane family proteinO.I.H.G.S.X.
0.3142.70.90Ta.20649.1.S1_x_atBU100263--7e-11At1g68020ATTPS6O.I.H.G.S.X.
0.2125.50.90Ta.19456.1.A1_s_atCD865926--3e-1At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)O.I.H.G.S.X.
0.1719.80.89TaAffx.47673.1.S1_atBQ806349--3e-9At5g35460unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.799.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.798.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.998.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.898.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0641400, orthologous to the query gene, Ta.1275.3.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5978.0Os04g0641400At4g13830-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-1At2g14700unknown proteinO.I.H.G.S.X.
0.5269.6Os05g0280200At4g13830-Ras-related protein RGP2 (GTP-binding regulatoryprotein RGP2)3e-18At1g07410ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)O.I.H.G.S.X.
0.4762.3Os02g0697800At4g13830-SCAMP family protein4e-5At1g32050secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.4660.9Os03g0775200At4g13830-Putative methyltransferase DUF248 family protein4e-10At1g19430dehydration-responsive protein-relatedO.I.H.G.S.X.
0.4558.8Os01g0111900At4g13830-Conserved hypothetical protein1e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4558.8Os01g0631100At4g13830-Conserved hypothetical protein2e-30At5g46340O-acetyltransferase-relatedO.I.H.G.S.X.
0.4458.1Os03g0736300At4g13830-Endo-1,4-beta-glucanase (EC 3.2.1.4)1e-9At4g24260ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)O.I.H.G.S.X.
0.4253.9Os02g0164300At4g13830-Glycosyl transferase, family 31 protein2e-19At2g32430galactosyltransferase family proteinO.I.H.G.S.X.
0.3236.3Os07g0424400At4g13830-Cellulose synthase-71e-51At2g21770CESA9 (CELLULOSE SYNTHASE A9)O.I.H.G.S.X.
0.3134.5Os06g0223800At4g13830-C2 domain containing protein8e-15At2g22125bindingO.I.H.G.S.X.
0.2422.4Os03g0278000At4g13830-UDP-glucuronic acid decarboxylase2e-38At3g46440UXS5O.I.H.G.S.X.
0.2117.9Os04g0103300At4g13830-Conserved hypothetical protein8e-1At2g45670calcineurin B subunit-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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