CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.1275.3.S1_a_at

Gene name
Homology with Arabidopsis Similar to At4g13830: J20 (DNAJ-LIKE 20) (HF=4e+0)

Module size 6 genes

NF 0.29

%ile 47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.33 46.9 0.87 Ta.1275.3.S1_a_at CA611468 - - 4e+0 At4g13830 J20 (DNAJ-LIKE 20) O.I. H.G. S.X.
0.33 46.9 0.89 Ta.3840.1.S1_at CD919677 - - 4e-5 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative O.I. H.G. S.X.
0.32 44.4 0.89 Ta.1275.1.S1_at CA619292 - - 1e+1 At2g36100 integral membrane family protein O.I. H.G. S.X.
0.31 42.7 0.90 Ta.20649.1.S1_x_at BU100263 - - 7e-11 At1g68020 ATTPS6 O.I. H.G. S.X.
0.21 25.5 0.90 Ta.19456.1.A1_s_at CD865926 - - 3e-1 At2g20875 EPF1 (EPIDERMAL PATTERNING FACTOR 1) O.I. H.G. S.X.
0.17 19.8 0.89 TaAffx.47673.1.S1_at BQ806349 - - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.2 99.2 GSM314287 tissue type: 22 DAP endosperm - rep1 GSE12508 Transcription patterns during wheat development
9.7 99.1 GSM314289 tissue type: 22 DAP endosperm - rep3 GSE12508 Transcription patterns during wheat development
8.7 98.9 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
7.9 98.7 GSM314288 tissue type: 22 DAP endosperm - rep2 GSE12508 Transcription patterns during wheat development
6.9 98.4 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8 98.4 GSM315203 target strand labeled: Antisense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
6.8 98.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1 96.4 GSM314277 tissue type: pistil, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.9 96.1 GSM314275 tissue type: pistil, before anthesis - rep1 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, Gma.832.1.S1_at, orthologous to the query gene, Ta.1275.3.S1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.2 Gma.832.1.S1_at At4g13830 - - 2e+0 At1g19730 ATTRX4 O.I. H.G. S.X.
0.38 53.3 GmaAffx.74329.1.S1_at At4g13830 - - 2e+0 At4g28770 - O.I. H.G. S.X.
0.22 28.1 GmaAffx.91983.1.S1_s_at At4g13830 - - 9e-2 At5g61250 AtGUS1 (Arabidopsis thaliana glucuronidase 1) O.I. H.G. S.X.
0.21 26.6 GmaAffx.86349.1.S1_at At4g13830 - - 2e-3 At1g80610 unknown protein O.I. H.G. S.X.
0.21 26.6 Gma.5502.1.S1_at At4g13830 beta-tubulin - 5e-169 At5g44340 TUB4 O.I. H.G. S.X.
0.13 16.3 Gma.832.1.S1_a_at At4g13830 - - 2e+0 At1g19730 ATTRX4 O.I. H.G. S.X.
0.11 14.2 Gma.17909.1.S1_at At4g13830 - - 1e-1 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) O.I. H.G. S.X.
0.09 12.0 GmaAffx.87871.1.S1_at At4g13830 - - 2e-42 At3g55020 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.06 9.0 GmaAffx.85579.1.S1_at At4g13830 - - 7e-19 At4g02590 UNE12 (unfertilized embryo sac 12) O.I. H.G. S.X.
0.06 9.0 Gma.2302.2.S1_x_at At4g13830 Putative cysteine protease - 4e-15 At5g60360 AALP (Arabidopsis aleurain-like protease) O.I. H.G. S.X.
0.05 8.0 Gma.6701.2.S1_a_at At4g13830 - - 1e-25 At5g61670 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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