Co-expression analysis

Gene ID Ta.1275.3.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At4g13830: J20 (DNAJ-LIKE 20) (HF=4e+0)
Module size 6 genes
NF 0.29
%ile 47.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3346.90.87Ta.1275.3.S1_a_atCA611468--4e+0At4g13830J20 (DNAJ-LIKE 20)O.I.H.G.S.X.
0.3346.90.89Ta.3840.1.S1_atCD919677--4e-5At5g211705'-AMP-activated protein kinase beta-2 subunit, putativeO.I.H.G.S.X.
0.3244.40.89Ta.1275.1.S1_atCA619292--1e+1At2g36100integral membrane family proteinO.I.H.G.S.X.
0.3142.70.90Ta.20649.1.S1_x_atBU100263--7e-11At1g68020ATTPS6O.I.H.G.S.X.
0.2125.50.90Ta.19456.1.A1_s_atCD865926--3e-1At2g20875EPF1 (EPIDERMAL PATTERNING FACTOR 1)O.I.H.G.S.X.
0.1719.80.89TaAffx.47673.1.S1_atBQ806349--3e-9At5g35460unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.2GSM314287tissue type: 22 DAP endosperm - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
9.799.1GSM314289tissue type: 22 DAP endosperm - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
8.798.9GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
7.998.7GSM314288tissue type: 22 DAP endosperm - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.998.4GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM315203target strand labeled: Antisense - rep1GSE12528Wheat "Chinese Spring" natural antisense transcription surveyLink to GEO
6.898.4GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
5.397.6GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
4.196.4GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.996.1GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g13830, orthologous to the query gene, Ta.1275.3.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5065.3At4g13830827017J20 (DNAJ-LIKE 20)DnaJ-like protein (J20); nuclear geneO.I.H.G.S.X.
0.4050.8At3g13062820493-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.3643.6At1g80920844432J8J8 mRNA, nuclear gene encoding plastid protein, completeO.I.H.G.S.X.
0.2726.2At5g05690830453CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis. Expressed in cotyledons and leaves. Mutants display de-etiolation and derepression of light-induced genes in the dark, dwarfism, male sterility and activation of stress-regulated genes in the light. The expression of the gene using a CPD promoter:LUC fusion construct was shown to be under circadian and light control. Additionally, the circadian regulation was shown to be independent of BR levels as it remains unchanged in bri1 mutant lines. CPD appears to be involved in the autonomous pathway that regulates the transition to flowering, primarily through a BRI1-mediated signaling pathway that affects FLC expression levels, as uncovered by double mutant analyses.O.I.H.G.S.X.
0.2014.4At2g46220819229unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BPMOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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