Co-expression analysis

Gene ID	Ta.12685.1.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At2g28930: APK1B (HF=1e-1)
Module size	6 genes
NF	0.40
%ile	63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	82.0	0.92	Ta.12685.1.S1_x_at	CA722001	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.90	Ta.12685.1.S1_at	CA722001	-	-	1e-1	At2g28930	APK1B	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.95	Ta.26378.1.A1_s_at	CD490910	-	-	2e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	0.90	TaAffx.16626.2.S1_at	BJ231566	-	-	4e-1	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	0.90	Ta.21379.1.S1_at	CA674527	-	-	1e+0	At1g77655	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	0.91	Ta.30251.1.A1_at	BJ241342	-	-	2e+0	At4g15733	SCRL11 (SCR-Like 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.7	99.3	GSM139933	Anther mature anthers rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6	99.3	GSM139932	Anther mature anthers rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.7	99.2	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
10.6	99.2	GSM139931	Anther maturea nthers rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.5	99.2	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
10.5	99.2	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.9	99.1	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
8.4	98.9	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.1	97.5	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the maize gene, Zm.4078.1.A1_at, orthologous to the query gene, Ta.12685.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	Zm.4078.1.A1_at	At2g28930	protein kinase APK1A	-	6e-16	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.16834.1.A1_at	At2g28930	-	-	4e-1	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.7387.1.A1_at	At2g28930	-	-	2e+1	At5g18403	-	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.2946.1.S1_at	At2g28930	-	-	1e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.8842.1.A1_at	At2g28930	hypothetical protein LOC100193075	-	1e+0	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.10656.1.A1_at	At2g28930	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.625.1.S1_at	At2g28930	MAP kinase phosphatase	-	1e-1	At1g44020	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.14470.1.S1_a_at	At2g28930	hypothetical protein LOC100279736 /// GTP-binding protein SAR1A	-	2e-19	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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