CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12685.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At2g28930: APK1B (HF=1e-1)

Module size 6 genes

NF 0.40

%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 0.92 Ta.12685.1.S1_x_at CA722001 - - 1e-1 At2g28930 APK1B O.I. H.G. S.X.
0.67 86.3 0.90 Ta.12685.1.S1_at CA722001 - - 1e-1 At2g28930 APK1B O.I. H.G. S.X.
0.44 64.5 0.95 Ta.26378.1.A1_s_at CD490910 - - 2e+0 At2g18530 protein kinase family protein O.I. H.G. S.X.
0.39 56.1 0.90 TaAffx.16626.2.S1_at BJ231566 - - 4e-1 At5g39540 - O.I. H.G. S.X.
0.38 54.7 0.90 Ta.21379.1.S1_at CA674527 - - 1e+0 At1g77655 unknown protein O.I. H.G. S.X.
0.13 14.6 0.91 Ta.30251.1.A1_at BJ241342 - - 2e+0 At4g15733 SCRL11 (SCR-Like 11) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.7 99.3 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6 99.3 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.7 99.2 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
10.6 99.2 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.5 99.2 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
10.5 99.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.9 99.1 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
8.4 98.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4 97.7 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.46686.1.S1_at, orthologous to the query gene, Ta.12685.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.4 GmaAffx.46686.1.S1_at At2g28930 - - 1e-5 At1g07570 APK1A O.I. H.G. S.X.
0.53 74.2 Gma.5491.1.S1_at At2g28930 - - 1e+1 At5g51105 unknown protein O.I. H.G. S.X.
0.52 73.1 Gma.3639.1.S1_at At2g28930 syringolide-induced protein B15-3-5 - 1e-4 At2g38600 acid phosphatase class B family protein O.I. H.G. S.X.
0.44 63.3 GmaAffx.91013.1.S1_s_at At2g28930 - - 5e+0 At5g51105 unknown protein O.I. H.G. S.X.
0.33 46.1 GmaAffx.4941.1.S1_at At2g28930 - - 6e-1 At2g31170 SYCO ARATH O.I. H.G. S.X.
0.29 39.0 Gma.7325.1.S1_at At2g28930 - - 2e+0 At1g53625 unknown protein O.I. H.G. S.X.
0.29 39.0 Gma.2457.1.S1_at At2g28930 - - 2e+0 At1g61795 - O.I. H.G. S.X.
0.25 32.6 GmaAffx.89508.1.A1_s_at At2g28930 - - 4e-1 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.24 30.9 Gma.11238.1.S1_at At2g28930 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.23 29.9 GmaAffx.90026.1.S1_s_at At2g28930 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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