CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Ta.12685.1.S1_x_at

Gene name
Homology with Arabidopsis Similar to At2g28930: APK1B (HF=1e-1)

Module size 6 genes

NF 0.40

%ile 63.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 82.0 0.92 Ta.12685.1.S1_x_at CA722001 - - 1e-1 At2g28930 APK1B O.I. H.G. S.X.
0.67 86.3 0.90 Ta.12685.1.S1_at CA722001 - - 1e-1 At2g28930 APK1B O.I. H.G. S.X.
0.44 64.5 0.95 Ta.26378.1.A1_s_at CD490910 - - 2e+0 At2g18530 protein kinase family protein O.I. H.G. S.X.
0.39 56.1 0.90 TaAffx.16626.2.S1_at BJ231566 - - 4e-1 At5g39540 - O.I. H.G. S.X.
0.38 54.7 0.90 Ta.21379.1.S1_at CA674527 - - 1e+0 At1g77655 unknown protein O.I. H.G. S.X.
0.13 14.6 0.91 Ta.30251.1.A1_at BJ241342 - - 2e+0 At4g15733 SCRL11 (SCR-Like 11) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.7 99.3 GSM139933 Anther mature anthers rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
11.6 99.3 GSM139932 Anther mature anthers rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.7 99.2 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
10.6 99.2 GSM139931 Anther maturea nthers rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
10.5 99.2 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
10.5 99.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
9.9 99.1 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
8.4 98.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4 97.7 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
5.1 97.5 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g28930, orthologous to the query gene, Ta.12685.1.S1_x_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g28930 817442 APK1B F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.33 38.1 At2g26770 817218 plectin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. H.G. S.X.
0.29 30.3 At3g13690 820578 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.25 22.6 At3g61150 825287 HDG1 (HOMEODOMAIN GLABROUS 1) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. O.I. H.G. S.X.
0.24 20.7 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA O.I. H.G. S.X.
0.22 17.5 At5g50860 835158 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA O.I. H.G. S.X.
0.22 17.5 At5g60710 836192 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:plasma membrane;BMOPFA O.I. H.G. S.X.
0.21 15.8 At2g23460 816878 XLG1 (EXTRA-LARGE G-PROTEIN 1) encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits. O.I. H.G. S.X.
0.20 14.4 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. O.I. H.G. S.X.
0.20 14.4 At4g15415 827211 ATB' GAMMA B' regulatory subunit of PP2A (AtB'gamma) O.I. H.G. S.X.
0.18 11.4 At5g49230 834983 HRB1 (HYPERSENSITIVE TO RED AND BLUE) Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction. O.I. H.G. S.X.
0.17 10.2 At5g18500 831968 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.13 5.8 At1g11930 837744 alanine racemase family protein F:pyridoxal phosphate binding;P:biological_process unknown;C:cellular_component unknown;OBMFPA O.I. H.G. S.X.
0.10 3.4 At1g61010 842393 CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPV O.I. H.G. S.X.
0.10 3.4 At1g14510 838013 AL7 (ALFIN-LIKE 7) AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. O.I. H.G. S.X.
0.09 2.8 At4g03550 825650 ATGSL05 (GLUCAN SYNTHASE-LIKE 5) Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense. O.I. H.G. S.X.
0.09 2.8 At3g22170 821781 FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3) A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1. O.I. H.G. S.X.
0.08 2.3 At2g30980 817649 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta) Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts. O.I. H.G. S.X.
0.05 1.1 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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