Co-expression analysis

Gene ID	Ta.12665.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g10840: endomembrane protein 70, putative (HF=2e-76)
Module size	6 genes
NF	0.31
%ile	50.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.5	0.97	Ta.12665.1.S1_at	CK196684	-	-	2e-76	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.57	79.2	0.97	TaAffx.12998.3.S1_at	BJ211963	-	-	1e+0	At5g23420	HMGB6	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.97	Ta.28202.1.S1_x_at	CK205498	-	-	1e-3	At5g42090	-	O.I.	H.G.	S.X.	Please select
0.31	42.7	0.97	Ta.7132.1.S1_at	CA686456	-	-	1e-27	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.97	Ta.3036.2.S1_x_at	BJ320080	-	-	4e+0	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.97	Ta.20778.1.A1_s_at	CK205545	-	-	1e-2	At5g35080	protein binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.2	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.0	96.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.5	92.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM139923	Anther telophaseI-telophaseII rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.0	89.7	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage