Co-expression analysis

Gene ID	Ta.12636.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=4e+0)
Module size	6 genes
NF	0.75
%ile	95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.91	Ta.12636.3.S1_x_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Ta.12636.1.S1_s_at	BJ237568	-	-	2e-1	At3g14700	-	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.92	Ta.28997.1.A1_at	BQ169867	-	-	1e+0	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.1	0.92	Ta.12636.3.S1_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.63	83.1	0.91	TaAffx.94593.1.S1_at	CA733739	-	-	1e-1	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.92	Ta.13275.2.S1_a_at	CA609630	-	-	6e-6	At2g46225	ABIL1 (Abi-1-like 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.5	92.5	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.5	92.5	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.4	92.0	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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