Co-expression analysis

Gene ID Ta.12636.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=4e+0)
Module size 6 genes
NF 0.75
%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.91Ta.12636.3.S1_x_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.7790.80.92Ta.12636.1.S1_s_atBJ237568--2e-1At3g14700-O.I.H.G.S.X.
0.7389.10.92Ta.28997.1.A1_atBQ169867--1e+0At2g41835zinc finger (C2H2 type, AN1-like) family proteinO.I.H.G.S.X.
0.7389.10.92Ta.12636.3.S1_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.6383.10.91TaAffx.94593.1.S1_atCA733739--1e-1At1g48370YSL8 (YELLOW STRIPE LIKE 8)O.I.H.G.S.X.
0.4666.80.92Ta.13275.2.S1_a_atCA609630--6e-6At2g46225ABIL1 (Abi-1-like 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.8GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.294.8GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.094.3GSM314274tissue type: floral bracts, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
3.094.3GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
2.692.9GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.592.5GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.592.5GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.592.5GSM343687Wheat var. Kennedy_Fp inoculated_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.492.0GSM343678Wheat var. Kennedy_control_rep1GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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