Co-expression analysis

Gene ID Ta.12636.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=4e+0)
Module size 6 genes
NF 0.84
%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92Ta.12636.3.S1_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.9198.20.92Ta.28997.1.A1_atBQ169867--1e+0At2g41835zinc finger (C2H2 type, AN1-like) family proteinO.I.H.G.S.X.
0.9198.20.92Ta.12636.1.S1_s_atBJ237568--2e-1At3g14700-O.I.H.G.S.X.
0.8393.40.90Ta.12636.3.S1_x_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.6786.30.94TaAffx.108295.1.S1_s_atBQ743485--1e+0At5g46020unknown proteinO.I.H.G.S.X.
0.5072.40.91TaAffx.94593.1.S1_atCA733739--1e-1At1g48370YSL8 (YELLOW STRIPE LIKE 8)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.094.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.190.3GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.190.3GSM138144Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO
2.089.7GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.089.7GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.089.7GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.089.7GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5621.1.A1_at, orthologous to the query gene, Ta.12636.3.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7792.1Zm.5621.1.A1_atAt5g24155hypothetical protein LOC100273111-3e+0At2g33990iqd9 (IQ-domain 9)O.I.H.G.S.X.
0.4556.4Zm.2374.1.A1_atAt5g24155hypothetical protein LOC100192983-3e+0At3g46010ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)O.I.H.G.S.X.
0.4455.7Zm.18469.1.S1_atAt5g24155oxidoreductase-2e-7At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4149.7Zm.161.2.S1_a_atAt5g24155protein b-32-9e-2At1g65270unknown proteinO.I.H.G.S.X.
0.4048.5Zm.1263.1.A1_atAt5g24155hypothetical protein LOC100274372-1e-7At3g51820G4O.I.H.G.S.X.
0.4048.5Zm.788.1.A1_x_atAt5g24155Hypothetical protein LOC100194151-7e-72At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.3945.6Zm.1061.1.A1_atAt5g24155--1e+0At1g66590cox19 family proteinO.I.H.G.S.X.
0.3945.6Zm.18283.1.A1_atAt5g24155hypothetical protein LOC100217202 /// hypothetical protein LOC100217213-5e+0At5g49540unknown proteinO.I.H.G.S.X.
0.3844.2Zm.10077.1.A1_atAt5g24155glycine-rich protein-7e-1At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.3742.3Zm.2181.1.S1_atAt5g24155--9e-1At2g10602unknown proteinO.I.H.G.S.X.
0.3538.9Zm.6665.1.S1_atAt5g24155hypothetical protein LOC100274698-3e-7At5g49720ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)O.I.H.G.S.X.
0.3538.9Zm.2953.1.S1_atAt5g24155hypothetical protein LOC100276099-3e-6At5g13500unknown proteinO.I.H.G.S.X.
0.3437.2Zm.13263.1.A1_atAt5g24155nitrite reductase-1e+0At2g15620NIR1 (NITRITE REDUCTASE 1)O.I.H.G.S.X.
0.3437.2Zm.6822.2.A1_atAt5g24155--3e-2At5g42560abscisic acid-responsive HVA22 family proteinO.I.H.G.S.X.
0.3336.0------O.I.H.G.S.X.
0.3131.6Zm.19146.1.A1_atAt5g24155hypothetical protein LOC100193961-5e-1At3g09050unknown proteinO.I.H.G.S.X.
0.3131.6Zm.4878.1.A1_atAt5g24155hsc70-interacting protein-6e-8At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.2928.1Zm.1719.1.S1_atAt5g24155--7e-1At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.2928.1Zm.16896.1.A1_s_atAt5g24155hypothetical protein LOC100280314-5e+0At1g01230ORMDL family proteinO.I.H.G.S.X.
0.2828.1Zm.8972.1.S1_atAt5g24155hypothetical protein LOC100217237-7e-17At3g54320WRI1 (WRINKLED 1)O.I.H.G.S.X.
0.2828.1Zm.19335.1.A1_atAt5g24155hypothetical protein LOC100279445-6e-4At3g22440hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2521.3Zm.10869.1.S1_atAt5g24155--3e-1At3g07510unknown proteinO.I.H.G.S.X.
0.2318.6Zm.12634.6.S1_atAt5g24155hypothetical protein LOC100193874-8e-55At3g04400emb2171 (embryo defective 2171)O.I.H.G.S.X.
0.2318.6Zm.4049.1.A1_atAt5g24155hypothetical protein LOC100279705-1e+0At5g14130peroxidase, putativeO.I.H.G.S.X.
0.2014.2Zm.16892.3.S1_x_atAt5g24155calmodulin binding protein-5e-3At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.1912.8Zm.19300.1.S1_atAt5g24155DNA repair protein RAD51-3e+0At2g45280ATRAD51CO.I.H.G.S.X.
0.1811.6Zm.13851.1.A1_atAt5g24155--7e-1At4g38980unknown proteinO.I.H.G.S.X.
0.1710.6Zm.13671.1.S1_atAt5g24155Hypothetical protein LOC100193899-5e+0At5g42850-O.I.H.G.S.X.
0.136.8Zm.9852.1.A1_atAt5g24155syntaxin 121-5e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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