Co-expression analysis

Gene ID	Ta.12636.3.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=4e+0)
Module size	6 genes
NF	0.84
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	0.92	Ta.12636.3.S1_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.92	Ta.28997.1.A1_at	BQ169867	-	-	1e+0	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.2	0.92	Ta.12636.1.S1_s_at	BJ237568	-	-	2e-1	At3g14700	-	O.I.	H.G.	S.X.	Please select
0.83	93.4	0.90	Ta.12636.3.S1_x_at	CA654694	-	-	4e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	86.3	0.94	TaAffx.108295.1.S1_s_at	BQ743485	-	-	1e+0	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	0.91	TaAffx.94593.1.S1_at	CA733739	-	-	1e-1	At1g48370	YSL8 (YELLOW STRIPE LIKE 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
2.8	93.6	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
2.6	92.9	GSM138191	genotype D39 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.1	90.3	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
2.0	89.7	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.0	89.7	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.0	89.7	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
2.0	89.7	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the maize gene, Zm.5621.1.A1_at, orthologous to the query gene, Ta.12636.3.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	Zm.5621.1.A1_at	At5g24155	hypothetical protein LOC100273111	-	3e+0	At2g33990	iqd9 (IQ-domain 9)	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.2374.1.A1_at	At5g24155	hypothetical protein LOC100192983	-	3e+0	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.18469.1.S1_at	At5g24155	oxidoreductase	-	2e-7	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.161.2.S1_a_at	At5g24155	protein b-32	-	9e-2	At1g65270	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.1263.1.A1_at	At5g24155	hypothetical protein LOC100274372	-	1e-7	At3g51820	G4	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.788.1.A1_x_at	At5g24155	Hypothetical protein LOC100194151	-	7e-72	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.1061.1.A1_at	At5g24155	-	-	1e+0	At1g66590	cox19 family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.18283.1.A1_at	At5g24155	hypothetical protein LOC100217202 /// hypothetical protein LOC100217213	-	5e+0	At5g49540	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.10077.1.A1_at	At5g24155	glycine-rich protein	-	7e-1	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.2181.1.S1_at	At5g24155	-	-	9e-1	At2g10602	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.6665.1.S1_at	At5g24155	hypothetical protein LOC100274698	-	3e-7	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.2953.1.S1_at	At5g24155	hypothetical protein LOC100276099	-	3e-6	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.13263.1.A1_at	At5g24155	nitrite reductase	-	1e+0	At2g15620	NIR1 (NITRITE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.6822.2.A1_at	At5g24155	-	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.19146.1.A1_at	At5g24155	hypothetical protein LOC100193961	-	5e-1	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.4878.1.A1_at	At5g24155	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.1719.1.S1_at	At5g24155	-	-	7e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.16896.1.A1_s_at	At5g24155	hypothetical protein LOC100280314	-	5e+0	At1g01230	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.8972.1.S1_at	At5g24155	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.19335.1.A1_at	At5g24155	hypothetical protein LOC100279445	-	6e-4	At3g22440	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.10869.1.S1_at	At5g24155	-	-	3e-1	At3g07510	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.12634.6.S1_at	At5g24155	hypothetical protein LOC100193874	-	8e-55	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.4049.1.A1_at	At5g24155	hypothetical protein LOC100279705	-	1e+0	At5g14130	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.16892.3.S1_x_at	At5g24155	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.19300.1.S1_at	At5g24155	DNA repair protein RAD51	-	3e+0	At2g45280	ATRAD51C	O.I.	H.G.	S.X.	Please select
0.18	11.6	Zm.13851.1.A1_at	At5g24155	-	-	7e-1	At4g38980	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.13671.1.S1_at	At5g24155	Hypothetical protein LOC100193899	-	5e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.9852.1.A1_at	At5g24155	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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