Co-expression analysis

Gene ID Ta.12636.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=4e+0)
Module size 6 genes
NF 0.84
%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.20.92Ta.12636.3.S1_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.9198.20.92Ta.28997.1.A1_atBQ169867--1e+0At2g41835zinc finger (C2H2 type, AN1-like) family proteinO.I.H.G.S.X.
0.9198.20.92Ta.12636.1.S1_s_atBJ237568--2e-1At3g14700-O.I.H.G.S.X.
0.8393.40.90Ta.12636.3.S1_x_atCA654694--4e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.6786.30.94TaAffx.108295.1.S1_s_atBQ743485--1e+0At5g46020unknown proteinO.I.H.G.S.X.
0.5072.40.91TaAffx.94593.1.S1_atCA733739--1e-1At1g48370YSL8 (YELLOW STRIPE LIKE 8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.896.0GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.094.3GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.893.6GSM298092Crown tissue of Solstice at 3 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO
2.692.9GSM138191genotype D39 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.190.3GSM111232genotype H8 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.190.3GSM138144Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SBGSE5937Wheat expression level polymorphism study parental genotypes 2 biological reps from SB locationLink to GEO
2.089.7GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.089.7GSM138154genotype H5 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
2.089.7GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.089.7GSM298078Leaf tissue of Solstice at 3 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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