Co-expression analysis

Gene ID Ta.12606.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=5e-3)
Module size 7 genes
NF 0.09
%ile 20.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9298.50.97Ta.12606.1.A1_atBQ169397--5e-3At3g01300protein kinase, putativeO.I.H.G.S.X.
0.3040.90.97Ta.7755.1.A1_atBJ286982--3e-11At1g56170NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)O.I.H.G.S.X.
0.2532.10.97Ta.7210.1.S1_a_atCK212620--5e-2At3g61350SKIP4 (SKP1 INTERACTING PARTNER 4)O.I.H.G.S.X.
0.1719.80.98Ta.6169.1.S1_atBJ272139--8e-4At3g11200AL2 (ALFIN-LIKE 2)O.I.H.G.S.X.
0.1415.80.98Ta.7549.1.S1_atCK167800--7e-2At1g21700ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C)O.I.H.G.S.X.
0.1112.40.97Ta.2665.1.S1_atCD454403--4e-2At1g45976SBP1 (s-ribonuclease binding protein 1)O.I.H.G.S.X.
0.023.60.97Ta.7457.1.S1_atCK166374--3e+0Atmg01260-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.396.7GSM298076Crown tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.495.2GSM298075Crown tissue of Paragon at 9 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
3.194.5GSM314273tissue type: floral bracts, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
3.194.5GSM343688Wheat var. Kennedy_Fp inoculated_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.793.3GSM343685Wheat var. Kennedy_control_rep3GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.692.9GSM343682Wheat var. Kennedy_control_rep2GSE13660Gene expression analysis of the wheat response to infection by Fusarium pseudograminearumLink to GEO
2.592.5GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM250907Tc_7dpi_mock_rep2GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
2.592.5GSM111233genotype H8 developing seed at 5 days after anthesis, biological rep2GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
2.391.5GSM298091Leaf tissue of Solstice at 9 weeks post germinationGSE11774Expression data from cold treated wheat cultivarsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage