Co-expression analysis

Gene ID Ta.12529.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g14880: OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) (HF=4e+0)
Module size 6 genes
NF 0.68
%ile 91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8092.20.91Ta.12529.1.S1_atCK211211--4e+0At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.9198.20.82Ta.25161.1.S1_x_atBQ578355--1e+1At5g50375CPI1 (CYCLOPROPYL ISOMERASE)O.I.H.G.S.X.
0.9198.20.82Ta.25161.1.S1_atBQ578355--1e+1At5g50375CPI1 (CYCLOPROPYL ISOMERASE)O.I.H.G.S.X.
0.8092.20.88Ta.14459.1.S1_x_atBJ218617--5e+0At2g21070FIO1 (FIONA1)O.I.H.G.S.X.
0.8092.20.92Ta.12529.1.S1_x_atCK211211--4e+0At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.3040.90.82Ta.6445.2.S1_x_atCA594529--3e+0At4g01420CBL5 (CALCINEURIN B-LIKE PROTEIN 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.299.6GSM314252tissue type: germinating seed, coleoptile - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
15.399.6GSM314251tissue type: germinating seed, coleoptile - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
14.799.5GSM314275tissue type: pistil, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
13.699.5GSM314277tissue type: pistil, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
13.699.5GSM314253tissue type: germinating seed, coleoptile - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
13.399.5GSM314276tissue type: pistil, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
5.197.5GSM138169genotype B68 developing seed at 5 days after anthesis, biological rep3GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.896.0GSM111230genotype B33 developing seed at 5 days after anthesis, biological rep1GSE4935wheat expression level polymorphism study 39 genotypes 2 biological repsLink to GEO
3.795.8GSM138192genotype B33 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO
3.294.8GSM138200genotype F48 developing seed at 5 days after anthesis, biological rep1GSE5939Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB locationLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0431700, orthologous to the query gene, Ta.12529.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os12g0431700At4g14880-ab initio prediction with EST support5e+0At4g33450MYB69 (MYB DOMAIN PROTEIN 69)O.I.H.G.S.X.
0.5877.0Os08g0240500At4g14880-Glycoside hydrolase, family 16 protein1e+0At4g14130XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)O.I.H.G.S.X.
0.5471.9Os05g0202300At4g14880-Conserved hypothetical protein1e-1At5g14180MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)O.I.H.G.S.X.
0.5068.0Os01g0899700At4g14880-Pollen Ole e 1 allergen and extensin domaincontaining protein8e-1At5g45550mob1/phocein family proteinO.I.H.G.S.X.
0.3846.9Os06g0534800At4g14880-Ankyrin repeat containing protein3e+0At5g23100unknown proteinO.I.H.G.S.X.
0.3541.7Os08g0532700At4g14880-Peroxidase 55 precursor (EC 1.11.1.7) (AtperoxP55) (ATP20a)4e-5At5g58400peroxidase, putativeO.I.H.G.S.X.
0.3032.7Os04g0175500At4g14880-Transferase family protein3e+0At2g27180unknown proteinO.I.H.G.S.X.
0.2931.1Os04g0183300At4g14880-Amidase family protein1e+0At4g34880amidase family proteinO.I.H.G.S.X.
0.2831.1Os05g0286100At4g14880-Transcriptional regulator SUPERMAN1e-1At4g17810nucleic acid binding / transcription factor/ zinc ion bindingO.I.H.G.S.X.
0.2524.1Os06g0192400At4g14880-Glycosyl transferase, family 31 protein4e-2At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.2219.4Os07g0101800At4g14880--2e-3At5g06070RBE (RABBIT EARS)O.I.H.G.S.X.
0.1712.6Os02g0448000At4g14880-Protein of unknown function DUF296 domaincontaining protein8e-6At4g22810DNA-binding protein-relatedO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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