Co-expression analysis

Gene ID Ta.12420.3.S1_x_at
Gene name
Homology with ArabidopsisSimilar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=1e-2)
Module size 10 genes
NF 0.51
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7690.10.93Ta.12420.3.S1_x_atCA619975--1e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.5678.60.94TaAffx.39457.1.A1_atBG904975--2e+0Atmg00850-O.I.H.G.S.X.
0.5374.90.94Ta.26642.1.A1_atCD491457--5e-41At1g32060PRK (PHOSPHORIBULOKINASE)O.I.H.G.S.X.
0.4869.00.94TaAffx.56013.1.S1_atCA658531--6e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.4767.90.95TaAffx.5521.1.S1_atCA708179--3e+0At1g13960WRKY4O.I.H.G.S.X.
0.4666.80.95Ta.1977.2.A1_atBE231484--1e+0At3g07430emb1990 (embryo defective 1990)O.I.H.G.S.X.
0.4260.90.94TaAffx.108107.3.S1_atCA714538--4e+0At1g51950IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)O.I.H.G.S.X.
0.4260.90.93Ta.3916.3.S1_x_atCA637132--4e+0At5g20650COPT5O.I.H.G.S.X.
0.4058.40.94TaAffx.26415.1.S1_atCA689149--4e+0At5g62050OXA1O.I.H.G.S.X.
0.3549.80.94TaAffx.121232.1.A1_atBG907135--3e-2At1g29500auxin-responsive protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.799.1GSM298070Leaf tissue of Paragon at 9 weeks post germination, biological rep 2GSE11774Expression data from cold treated wheat cultivarsLink to GEO
9.299.0GSM250900TcLr34_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
8.198.8GSM298067Leaf tissue of Paragon at 5 weeks post germination, biological rep 1GSE11774Expression data from cold treated wheat cultivarsLink to GEO
8.098.8GSM314278tissue type: anthers, before anthesis - rep1GSE12508Transcription patterns during wheat developmentLink to GEO
8.098.8GSM250899TcLr34_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.798.7GSM314280tissue type: anthers, before anthesis - rep3GSE12508Transcription patterns during wheat developmentLink to GEO
7.498.6GSM250898TcLr1_3dpi_inoculated_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
7.298.5GSM250895Tc_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO
6.898.4GSM314279tissue type: anthers, before anthesis - rep2GSE12508Transcription patterns during wheat developmentLink to GEO
6.098.0GSM250897TcLr1_3dpi_mock_rep3GSE9915Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheatLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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