Co-expression analysis

Gene ID	Ta.12420.3.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=1e-2)
Module size	10 genes
NF	0.51
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	0.93	Ta.12420.3.S1_x_at	CA619975	-	-	1e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.56	78.6	0.94	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	O.I.	H.G.	S.X.	Please select
0.53	74.9	0.94	Ta.26642.1.A1_at	CD491457	-	-	5e-41	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.	Please select
0.48	69.0	0.94	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.47	67.9	0.95	TaAffx.5521.1.S1_at	CA708179	-	-	3e+0	At1g13960	WRKY4	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.94	TaAffx.108107.3.S1_at	CA714538	-	-	4e+0	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.42	60.9	0.93	Ta.3916.3.S1_x_at	CA637132	-	-	4e+0	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.94	TaAffx.26415.1.S1_at	CA689149	-	-	4e+0	At5g62050	OXA1	O.I.	H.G.	S.X.	Please select
0.35	49.8	0.94	TaAffx.121232.1.A1_at	BG907135	-	-	3e-2	At1g29500	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.2	99.0	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.1	98.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.0	98.8	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.7	98.7	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.4	98.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8	98.4	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
6.0	98.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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