Co-expression analysis

Gene ID	Ta.12360.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g70220: unknown protein (HF=4e+0)
Module size	7 genes
NF	0.24
%ile	39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.96	Ta.12360.1.A1_at	CA648024	-	-	4e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.8457.1.A1_x_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.16326.1.S1_at	BJ306642	-	-	1e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.2308.3.S1_x_at	CA683060	-	-	4e-3	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.96	TaAffx.61855.2.S1_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.114127.1.A1_at, orthologous to the query gene, Ta.12360.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.3	PtpAffx.114127.1.A1_at	At1g70220	hypothetical protein	-	1e-19	At4g32750	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.153346.1.A1_at	At1g70220	-	-	4e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.48013.1.S1_at	At1g70220	hypothetical protein	-	3e-2	At5g53310	myosin heavy chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.48013.2.S1_a_at	At1g70220	hypothetical protein	-	5e-6	At5g53310	myosin heavy chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.95495.1.A1_at	At1g70220	hypothetical protein	-	8e-28	At4g10570	UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.4758.2.A1_a_at	At1g70220	hypothetical protein	-	2e-2	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.24469.1.A1_a_at	At1g70220	hypothetical protein	-	8e-27	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.6596.1.A1_a_at	At1g70220	hypothetical protein	-	1e-38	At1g45050	ATUBC2-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.5311.1.S1_at	At1g70220	hypothetical protein	-	7e-31	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.43127.2.A1_at	At1g70220	hypothetical protein	-	6e+0	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.221478.1.S1_a_at	At1g70220	hypothetical protein	-	2e-9	At1g15780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.3187.1.A1_at	At1g70220	hypothetical protein	-	8e-18	At1g04970	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.1914.2.A1_a_at	At1g70220	hypothetical protein	-	2e-7	At5g13860	ELC-Like (ELCH-like)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.31484.3.A1_at	At1g70220	hypothetical protein	-	2e-5	At3g11560	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.34911.1.A1_a_at	At1g70220	hypothetical protein	-	6e-22	At4g33380	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.75081.1.S1_at	At1g70220	hypothetical protein	-	9e-2	At2g24550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.215079.1.S1_at	At1g70220	hypothetical protein	-	4e-78	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.215079.1.S1_x_at	At1g70220	hypothetical protein	-	4e-78	At3g23660	transport protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.102226.1.A1_at	At1g70220	hypothetical protein	-	3e+0	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.213602.1.S1_at	At1g70220	hypothetical protein	-	2e-154	At3g09090	DEX1 (DEFECTIVE IN EXINE FORMATION 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.4916.2.S1_s_at	At1g70220	hypothetical protein	-	5e-84	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.6381.1.S1_at	At1g70220	integral membrane single C2 domain protein /// integral membrane single C2 domain protein	-	6e-10	At3g61050	NTMC2T4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.1420.6.A1_at	At1g70220	hypothetical protein	-	6e-12	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.200608.1.S1_at	At1g70220	hypothetical protein	-	1e-1	At1g63057	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.66306.1.S1_at	At1g70220	hypothetical protein	-	6e-2	At2g27570	sulfotransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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