Co-expression analysis

Gene ID	Ta.12360.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g70220: unknown protein (HF=4e+0)
Module size	7 genes
NF	0.24
%ile	39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	0.96	Ta.12360.1.A1_at	CA648024	-	-	4e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.96	Ta.8457.1.A1_x_at	BE430699	-	-	6e+0	At2g20619	-	O.I.	H.G.	S.X.	Please select
0.40	58.4	0.96	Ta.9630.2.S1_at	CA691213	-	-	2e-1	At1g80160	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	0.96	Ta.3203.2.S1_x_at	CA621738	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	0.96	Ta.16326.1.S1_at	BJ306642	-	-	1e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	0.96	Ta.2308.3.S1_x_at	CA683060	-	-	4e-3	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	0.96	TaAffx.61855.2.S1_at	CA614570	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.5	97.8	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9	97.3	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.6	95.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.9	94.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.48712.1.S1_at, orthologous to the query gene, Ta.12360.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.48712.1.S1_at	At1g70220	-	-	9e-7	At1g75490	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.50	71.7	HgAffx.17965.1.S1_at	At1g70220	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	PsAffx.psHB004xH08f_at	At1g70220	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	Gma.1143.1.A1_at	At1g70220	-	-	4e-6	At2g16860	GCIP-interacting family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.437.1.S1_s_at	At1g70220	Profilin, PRO2	-	1e-10	At2g19760	PRF1 (PROFILIN 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.66329.1.S1_at	At1g70220	-	-	5e-6	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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