Co-expression analysis

Gene ID	Ta.12339.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At1g24400: LHT2 (LYSINE HISTIDINE TRANSPORTER 2) (HF=5e-15)
Module size	7 genes
NF	0.51
%ile	77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	0.93	Ta.12339.1.S1_s_at	BT009250.1	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.60	81.0	0.95	Ta.6155.2.S1_x_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	0.94	Ta.28479.1.S1_at	BJ286275	-	-	9e-6	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.46	66.8	0.95	Ta.6155.2.S1_a_at	CA695243	-	-	3e-1	At5g55340	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.94	Ta.12339.1.S1_at	BT009250.1	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.44	64.5	0.96	Ta.6155.1.S1_at	CD867059	-	-	1e-1	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	0.95	TaAffx.122210.3.S1_x_at	CA689966	-	-	1e+1	At5g54970	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.3	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.2	98.1	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.0	98.0	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.6	97.8	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5	97.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.7	97.1	GSM143518	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.4	96.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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